Caldicellulosiruptor changbaiensis: ELD05_03960
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Entry
ELD05_03960 CDS
T05905
Name
(GenBank) RNA polymerase sporulation sigma factor SigH
KO
K27000
RNA polymerase sigma-H factor
Organism
ccha
Caldicellulosiruptor changbaiensis
Brite
KEGG Orthology (KO) [BR:
ccha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccha03021
]
ELD05_03960
Transcription machinery [BR:
ccha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ELD05_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
HTH_16
DUF4712
HTH_23
SMC_Nse1
Ctf4_C
GerE
HTH_38
Terminase_5
HTH_28
Motif
Other DBs
NCBI-ProteinID:
AZT89881
UniProt:
A0A3T0D4A5
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All DBs
Position
863971..864603
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AA seq
210 aa
AA seq
DB search
MTSQKQLLNFKECTDEELVKYSREGIKEATEELLNRYQNLVKAKCRMYFLIGAEKDDIYQ
EGMIGLFKAVRDFDETKYPAFKLFAELCITRQVITAIKTASRQKHIPLNTYISLNKPVYE
ENDERTLLDTIANSFISDPEEVMITKEEFENALNVITGCLSPFEYKVLNLYLEGRSYQEI
AEMIHKDVKSIDNALQRVKKKIEKYLNTSE
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
ttgacatcacaaaaacaacttttaaatttcaaagagtgtacagatgaagaacttgtaaag
tattcgcgcgagggtatcaaagaggctacagaagagcttttaaataggtatcaaaacctt
gtaaaggcaaagtgtagaatgtactttttaattggtgctgaaaaggatgacatttatcaa
gaaggcatgatagggctttttaaagctgtacgtgattttgatgagaccaagtatcctgcc
tttaagttatttgcagagctctgtataacaaggcaggtgataactgcaataaagacagca
agtaggcaaaagcatatacctcttaacacgtacatatcactgaacaaacccgtttatgaa
gagaatgacgagaggactttgcttgacacaattgctaactcttttatctctgatccggaa
gaggttatgattacaaaggaggagtttgaaaacgccttaaatgtcatcacagggtgtcta
agtccatttgagtacaaggttctaaacctataccttgaaggaaggagctatcaagaaatt
gctgagatgattcacaaagatgtgaaatcaattgacaatgctctgcaacgtgtaaaaaag
aagattgaaaagtatttaaatacttctgaataa
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