Campylobacter coli RM5611: YSU_04070
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Entry
YSU_04070 CDS
T03167
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ccoi
Campylobacter coli RM5611
Pathway
ccoi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ccoi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
YSU_04070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccoi03021
]
YSU_04070
Transcription machinery [BR:
ccoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YSU_04070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
SieB
MCR_beta_N
Motif
Other DBs
NCBI-ProteinID:
AHK75047
LinkDB
All DBs
Position
complement(803613..805478)
Genome browser
AA seq
621 aa
AA seq
DB search
MNAKTQDMELEELFKENEKDYITYEKLVKYFSKQPNSATAKKVQTLMKKYKVQLFSAAEI
AQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRSDSPVRMYLREMGQIALLN
KDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYREPLINRERRVKELFKSFDDEEKND
DKLDELEDEDEENDEELENEEETPKKTSKKEDERTLKVIEKFKALEKAKKDWLKVSKDKE
SGDEILDKLGIAFKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLEYRL
PMFSEELKNRHANILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKEASEKSFDLEK
ERLKEILEQIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKA
VDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDG
KEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHI
LKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSA
IKKLKHPKVGRKLKNYIEGWK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccaaaacccaagatatggaacttgaagagctctttaaagaaaacgaaaaagat
tatatcacttacgaaaaattagtaaaatacttcagcaagcaacctaattcagccactgcc
aaaaaagtccaaactttaatgaaaaagtataaagtacagttattttcggctgctgaaatt
gcacaaatgaaaaatatagaagatgcaaaaagattgcaagaagaaaaacaaaaattgcaa
gatactagtcttgagaatgaatttgatttagccaatgaaaatgatttgctagaatggagc
agatcggattctcctgtgcgtatgtatctaagagaaatggggcaaattgcacttttaaat
aaagatgaagaaatcgaaatttccaaaaaaattgaacttggtgaagatattatcatagat
gctttttgttccgtgccttatttgattgactttattttagattatcgtgaaccactgatc
aatagagaaagaagagtaaaagaacttttcaaaagctttgatgatgaagaaaaaaatgat
gataagcttgatgaactagaggacgaggatgaagaaaacgatgaagaattagaaaatgaa
gaagaaactcctaaaaaaacaagcaaaaaagaagatgaaagaactttaaaagtcatagaa
aaatttaaagctttagagaaggcaaaaaaagattggctaaaagtttctaaagataaagaa
agtggagatgaaattttagacaaacttggaattgcttttaagaaaaatattctaaaagaa
aagctgatggatctaggtccaacttctaaactcatcagtgaaattgtaaaatcaatggaa
actgccttaaaaagcgatgaagaattcgataaagaattaaaacgcctagaataccgtttg
ccaatgttttctgaagaattaaaaaatcgtcatgctaatatcttaaaagatattacaaaa
ttaagcaaggaagaaattaccgaaagagcgcttgaaacgactatggtaagcacttacatg
gagataaaaaaactttttcaaactaaagaagcgagcgagaaaagctttgacttagaaaaa
gagcgcttgaaagaaattttagagcaaatcaaacgaggtaaaaaaatttctgatgaagct
aaaactagaatggctaaatcaaatttgcgtcttgttgtaagtattgctaagcgttataca
aaccgtggtttaccttttttagatcttatccaagaaggcaatataggtcttatgaaagca
gtggataaatttgagtacaaaagaggatataaattttcaacctatgcaacttggtggata
agacaagctatttcaagagcgatcgcagaccaagctagaactataagaatacctattcat
atgatagaaaccatcaatcaaatcaataaaattatacgcgagcatttgcaaaaagacgga
aaagagcctgatgtaagtgttatagccaaagaagtaggacttagtgtggataaggttaag
caagtgattaaaatcacaaaagagcctatttcacttgaggcgcctattggtagtgaagat
gatggcaaatttggggattttgtagaagatagaaattcactctcgcctatggatcacatt
ttaaaagatgatttaaaagagcaaattgatgaagttcttgatcaactaaacgatagagaa
aaagcagttattcgtatgcgttttggtctaatggacgatgaaagcgatagaactttagaa
gaaataggtaaagaattaaatgttacacgcgaaagagtaagacaaatagaaagctctgca
attaaaaaactcaaacatccaaaagtgggtagaaaactcaaaaactatatcgagggttgg
aagtaa
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