Corvus cornix (hooded crow): 104685260
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Entry
104685260 CDS
T03546
Symbol
TNPO1
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104685260 (TNPO1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104685260 (TNPO1)
03009 Ribosome biogenesis [BR:
ccw03009
]
104685260 (TNPO1)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104685260 (TNPO1)
Ribosome biogenesis [BR:
ccw03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
104685260 (TNPO1)
Pre-60S particles
104685260 (TNPO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_2
Arm
IBN_N
Vac14_Fab1_bd
Cnd1
PDS5
Adaptin_N
CEP104-like_TOG
MMS19_C
Dopey_N
RTP1_C1
UNC45-central
DUF3689
Motif
Other DBs
NCBI-GeneID:
104685260
NCBI-ProteinID:
XP_039422642
LinkDB
All DBs
Position
Z:65314263..65384567
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AA seq
890 aa
AA seq
DB search
MEYEWKPDEQGLQQILQLLKESQSPDTTTQRAVQQKLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFHNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALV
MLLEVRMDRLLPHMISIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKEVLCRHLTKL
IPVLVNGMKYSEIDIILLKGDVEEDEAIPDSEQDIRPRFHRSKTVAQQHEEDGIEDDDDD
DDELDDDDTISDWNLRKCSAAALDVLANVFRDELLPHILPLLKELLFHPEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLAQAMLHNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMITVNPSGVVQDFIFFCDAVA
SWISPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAYYGV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgagtggaagcccgacgagcaggggctccagcagatcctgcagctgctcaag
gagtcccagtccccggacaccacaacgcagagagccgtgcaacaaaaactagaacaactc
aatcagtatccagatttcaacaactacctgatttttgttcttacaaagttgaagtctgaa
gatgagccaacacgttccttgagtggtcttatcttgaagaataatgtaaaagcacatttt
cacaactttccaaatggggtaactgacttcattaaaagtgaatgtctgaacaacatcggt
gattcctcccccttaattagagctactgtagggattctgataacaaccattgcctcaaaa
ggggagttacagaattggcctgagctcttgccaaagctttgcagcctgttggattctgaa
gattacaatacctgtgagggcgcttttggcgctcttcagaagatatgtgaagattctgct
gaaattttagatagtgatgtattggaccggccactcaatatcatgatacccaagttcttg
cagttcttcaagcacagcagtccaaaaatacggtctcatgcagtggcatgcgtcaatcag
tttatcatcagcagaactcaagctcttatgttgcacatagattcttttattgagaatctt
tttgcattggctggtgatgaggagcctgaagtacgcaaaaatgtttgccgtgctctggta
atgttgctggaagttcggatggatcgcctgcttcctcatatgattagtatagttgagtac
atgcttcaaaggacccaggatcaagatgaaaatgtggctttggaggcttgtgagttttgg
ctgactttggctgaacagccgatttgtaaagaggtattatgtcggcatcttactaagctg
atacctgtgctggtaaatggtatgaaatattcagagattgatattattctgttgaagggg
gatgttgaagaagacgaagctattccagatagtgagcaggacataaggcctcgttttcat
cgttcaaagacggtggctcagcaacatgaagaagatggtattgaagatgatgacgatgat
gatgatgaacttgatgatgatgatactatttctgactggaatttaaggaaatgttctgct
gctgctctagatgtcctagctaatgtgtttcgtgatgaacttctgcctcacatcttgcca
ctgttgaaggaattgctcttccaccccgagtgggtagttaaagaatctggtatccttgtt
cttggtgcaattgctgaaggctgcatgcagggtatgattccatatcttccagagctaatc
cctcaccttattcagtgcctctctgacaaaaaggctcttgtgcgctccattacatgctgg
actcttagtcgctatgcacactgggtagttagtcaacccccagacacatacttgaagcca
ttaatgactgagttgctaaagcgtatcttggatagcaacaagagagtacaagaagctgcc
tgcagtgcctttgctactctagaagaggaggcttgtacagagcttgttccttatcttgca
tatatacttgacactttggtcttcgcatttagtaaataccagcataaaaacctgctcatt
ctttatgatgctataggaaccctagcagattctgtaggacatcatctaaataaaccggaa
tatattcagatgctaatgcctccattaatccagaagtggaacatgctgaaggatgaagat
aaagatctcttccctttattagagtgcctgtcgtcagttgctactgccttgcaatctggc
tttcttccatactgtgaacctgtgtaccagcgttgtgtaaatctggtgcagaagacactt
gcacaagccatgttgcataatgcacagccagaccaatatgaggctccagataaagatttc
atgattgtggctcttgatttactcagtggtttagctgaaggacttggaggcaacattgaa
cagctagtggctcgcagcaatatcctgacactaatgtaccaatgtatgcaggacaaaatg
cctgaggtacggcagagttcttttgcattgttaggtgacctgacgaaggcatgttttcag
catgttaaaccttgcatcgctgatttcatgccaattttgggaaccaacctaaaccctgaa
ttcatttctgtgtgtaacaatgccacctgggcaattggagaaatctctatccagatgggt
atagaaatgcagccttatattccaatggtcttgcaccagcttgtagaaataattaacaga
cccaacacaccaaagacgttgttagagaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgcacctct
cttcgaaacataagagacaatgaggaaaaggattcagcattccgtgggatatgtaccatg
attacggtcaaccccagtggagtagttcaagactttatttttttttgtgatgctgttgca
tcatggattagcccaaaagatgatcttcgagacatgttctgtaagattcttcatggattt
aaaaatcaagttggggatgagaattggaggcgtttctctgaccagtttcctcttccctta
aaagagcgccttgcagcttactatggagtttaa
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