Corvus cornix (hooded crow): 104689516
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Entry
104689516 CDS
T03546
Symbol
DDX41
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
104689516 (DDX41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104689516 (DDX41)
Enzymes [BR:
ccw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104689516 (DDX41)
Spliceosome [BR:
ccw03041
]
Complex C
Other components
Complex C specific factors
104689516 (DDX41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
UTP25
SecA_DEAD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
104689516
NCBI-ProteinID:
XP_039415820
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All DBs
Position
13:complement(3713175..3719269)
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AA seq
617 aa
AA seq
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MEAAAERKRQREEPVDTSDLSGEDDDDYVPYVPVKQRKQQMLQKLLQMRRKVVSEEEQRD
SGSEQRGDEDDIPLGPQSNISLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRA
LMSVKEMAKGITYDDPIKTSWRAPRYILGMSEARHDRVRKKYHILVEGEGIPPPIKSFKE
MKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLE
QEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDGLPSLRCALCIGGMSVKE
QMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYF
KGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVYLL
ECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDV
LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACDESVL
MDLKALLLEAKQKVPPVLQVLHCGDETMLDIRGERGCAFCGGLGHRITNCPKLEAMQTKQ
VSNIGRKDYLAHSSMDF
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgcggcggagcggaagaggcagcgcgaggagccggtggacacgtccgacctg
tccggagaggatgacgacgactacgtgccctacgtgcccgtcaagcagcgcaagcagcag
atgctgcagaagctgctgcagatgcggcggaaggtagtgtcggaggaggagcagcgggac
agcgggagcgagcagcgcggggacgaggatgacatcccgctggggccccagtccaacatc
agtctgctggaccagcaccagcacctcaaagagaaggcggaagctcggaaggagtcagcc
aaggagaagcagctgaaggaggaagagaagatcctggagagtgtggcagagggccgagct
ctgatgtcagtgaaggagatggccaagggcatcacctacgacgacccgatcaaaaccagc
tggagagcccctcgctacattctgggcatgtcagaggcgcggcacgaccgcgtgcgcaag
aagtaccacatcctggtggagggggagggcatccctccccccatcaagagcttcaaggag
atgaagttcccagcagctatcctgagaggcctgaagaaaaaaggaatccagcagccaaca
cccatacagatccaaggcatccccacaatcctctcaggaagggatatgattggcatcgca
ttcactggctctgggaagaccttggtgttcaccctcccggtgatcatgttctgcctggag
caggagaagaggctgccattctccaagcgagagggaccctatggacttatcatctgtccc
tcgcgggagctggcccggcagacccacggcatcctggagtactactgtcgtctgctgcag
gaggatgggctgccctcactgcgctgtgccctctgcatcgggggcatgtctgtcaaggag
cagatggagaccatcaaacatggggtacacatgatggtggcaacccctgggcgcttgatg
gacctgctgcagaagaagatggtgagcctggacatctgccggtacctggcgttggatgag
gctgacaggatgattgatatgggctttgagggggacatccgtaccatcttctcctacttc
aagggccagcggcaaaccctcctcttcagtgccacaatgcccaagaagatccagaatttt
gccaagagtgccctggtgaagcccatcaccattaatgttgggcgagcgggtgctgccagc
ttggatgttgtgcaggaggtggagtatgtgaaagaggaggccaagatggtgtacctgctg
gagtgcctgcagaagacccctccacccgtgctgatcttcgcagagaagaaggcagatgtc
gatgcgatccacgagtacctgctgctcaagggcgtggaagctgtggccatccatggaggg
aaagatcaggaagaacggacaaaagccattgaggccttccgggatgggaagaaggatgtc
ctggttgccactgatgttgcttccaagggcctggacttcccagccatccagcacgtcatc
aactacgacatgccagaggagattgagaactatgttcaccgcattgggcgtacaggccgc
tcgggcaacactggcattgccaccaccttcatcaacaaggcctgtgatgagtcagtgctg
atggacctgaaggctctgctcctggaggcgaagcagaaggtgccacctgtgctccaggtg
ctgcactgtggggatgagaccatgctggacatcagaggtgagcggggctgcgccttctgc
ggcggcctgggccatcgcatcaccaactgccccaagctggaggcgatgcagaccaagcaa
gtcagcaacatcggccgcaaggactacctggcccacagctctatggacttctag
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