Corvus cornix (hooded crow): 104694344
Help
Entry
104694344 CDS
T03546
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X2
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104694344 (TNRC6C)
03036 Chromosome and associated proteins [BR:
ccw03036
]
104694344 (TNRC6C)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104694344 (TNRC6C)
Chromosome and associated proteins [BR:
ccw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104694344 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
RRM_1
UBA
RRM_occluded
THOC7
Motif
Other DBs
NCBI-GeneID:
104694344
NCBI-ProteinID:
XP_019146236
LinkDB
All DBs
Position
18:3916825..3994005
Genome browser
AA seq
1846 aa
AA seq
DB search
MVGRLLSSDLSHSGLGDHYENSHWGQQPAFRSEGNCSWDKVIIDRTDKEAWPSITGAETE
SASECTTDTDSASNCGSENSSMATGSAQGNFTGHTKKTNGNNGANGALVQSTSNQSALGA
GGANGNGSSARVWGVAAGSSSGLAHCSASGGDGKMDNMMGDGRSQNCWGASNSNAGINLN
LNPNANPAAWPVLGHEGTVGAGNPSSICSPVSAIGQNMGNQNGNPTGTLGAWGNLLPQES
TEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGMAVGMGAIIP
PHLQGLPGANGTAVSQVSGGSGEGMGSSVWGMSPGNPATGNSNSGFSQGNGDTVNSALSA
KQNGSSSAVQKEGNGANAWDSGPPSGPGVLAWGRGGGGGGVGSVHSGAWGHPNRSTSNGV
NGEWGKPPNQHSNSDINGKGSTGWDSSSVTSPNPAMQQGNEQMNSWAKAAASGTTASEGS
NDSGGSQNEGSTGREGAGEGRRRDKGMIDQGQVQLPRNDLDPRVLSNTGWGQTPVKQNTA
WEFEESPRSERKNDNGTEAWGCAATQSSNSGGKNDGSIMNSTNTSSVSGWVNSPPAAVPT
NTGWGDNNNKAPNGPGGWGESASSTTVNNAAAAKSGHAWSGTANQEDKSPTWGEPQKPKS
QNWGDGQKSNPSWTSGGGDWTDSSSVPGHLGDGKKNGSGWDSDNRSGSGWNDSTRSGTSG
WGNGTNSKANTGTSWGESLKPGPQQNWANKPQDNNVSNWGGAASVKQTGSGWVGGPVPAK
QKENCEATGWEEPSPPSIRRKMEIDDGTSAWGDPNYNNNKTVNMWDRNNPVIQSSTTTNT
TTTSTIINTNMVEPQPSHQSSAQPNRSPLLGPGWGEMPAVHTKSEASWGEPSSPSAAVDN
GTSAWGKPPSSGTGWGENPAEPAGTYGRTNAPAAAPALCKPASKSMQEGWGSGGDEVNLS
TSQWEDEEGDMWNNTASQESSSSCNSWGNAPKKGLQKPKTNPRLSLGTFWRTERKRLLKD
FVIEKLHRDLLKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSK
YLCALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPPPISKESSMDRPTFLDKLTLSFSNQD
GGLVEEPTTSPFLPSPSLKLPLSNSALPNQTLGGIASGLGMQNLNSSRQIPSGNLGMFGN
SGAAQARTMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLSPAQLTS
PINNPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQ
QHQRQLAQALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQAPGLPDLQTKEQQSSPNTFA
PYPLAGLNPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPNSMDNLSSAASSLDQNSSKH
GAIPGGLSIGPPGKSSLDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSI
NWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPTSSQ
NATLPSSSAWPLSASGYSSSFSSIASAPSIAGKLSDIKSTWSSGPISHTQASLSHELWKV
PRNTTAPTRPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWSTDSSGRTSSWLVLRNLTPQ
IDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFA
GEEEVNRFLAQGQALPPTSSWQSNTGSTPSRLGSSGSSHGLVRPDAGHWNPPCLGGKGSS
DLLWGGVPQYSSSLWGPPSADDGRVIGSPTPLNTLLPGDLLSGESI
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggttgggcggctcctttcttcagatctcagccacagtggattgggagaccattatgag
aattcccactggggacagcagcccgctttcaggagtgaaggcaactgcagctgggataaa
gtgataatagacaggactgacaaggaagcgtggccttccattaccggagctgagactgag
tctgcctcagaatgtactacagacactgactctgcctccaactgtggctcagagaacagt
agcatggctacagggagtgcccaaggcaacttcactggacatacaaagaaaactaatggc
aataatggcgccaacggagcactcgtccaaagcacttctaaccagagtgcccttggagct
ggtggagcaaacggcaacggcagctcggccagggtgtggggggtggctgcaggctccagc
tctggcctagctcactgctctgccagtggtggggatggaaagatggacaacatgatggga
gacggtagaagtcagaactgctggggtgcttccaactcgaatgctggcattaatcttaac
cttaaccctaatgccaatccagctgcctggcctgtacttggacatgaaggaactgtggga
gcaggcaacccttccagtatttgcagtccagtcagtgccataggtcagaacatgggcaac
cagaatgggaacccaacaggcactttaggtgcctggggaaacttgctgccgcaagagagc
acagaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaacctt
aacactgatggaccaaataacactaaccccatgaactcttcaccaaaccctatcaatgca
atgcagacaaacggactgccgaactgggggatggccgtgggcatgggggccatcatcccg
ccccacctgcaaggccttcctggtgctaatggaacagcggtttctcaagtcagcgggggc
agtggtgaaggaatgggcagttcagtgtgggggatgtccccaggtaatcctgccacagga
aacagcaattctgggttcagtcaggggaatggagacactgtgaactcagcattaagtgct
aaacaaaacggatccagcagtgctgtgcaaaaggaaggaaacggagcgaacgcgtgggac
tcggggcctccctctggccctggggtcctggcgtggggcaggggcggtggcggcggcggg
gttggcagtgtgcattctggagcgtggggccaccccaaccgcagcaccagcaacggtgtc
aacggggagtggggcaagcccccaaaccagcattccaatagcgacatcaatgggaaagga
tcaacagggtgggatagctcgagtgttaccagtccgaatcctgccatgcagcagggcaat
gaacaaatgaactcttgggccaaagctgcagcatctggcaccacagctagtgaaggaagc
aacgacagcggtgggagtcaaaatgaaggcagtactgggagggagggggctggagagggc
aggaggagagacaaagggatgatagaccaagggcaagttcagttgccaagaaatgacctt
gaccccagggtcctgtccaatacggggtggggacagacccctgtaaagcaaaacactgcc
tgggaatttgaagagtccccacggtctgaacggaagaatgacaatggaacagaggcctgg
ggttgtgcagctactcaatcttcaaactcaggggggaagaacgatgggtccatcatgaac
agtacaaatacctcttcagtatctgggtgggtcaactctccaccggcagctgttccaaca
aatacaggctggggagacaataacaacaaagcaccaaatggcccgggggggtggggagag
tcagcaagctctactactgttaataatgctgctgctgccaaaagcggccacgcttggagt
gggaccgcaaatcaggaggacaaatcacctacctggggtgaacctcagaaacccaaatct
caaaactggggagatggacagaaatcaaatccaagctggacttcaggaggtggagactgg
acagattcatcatctgttcctggacacttgggtgatgggaagaagaatggatctggatgg
gattctgacaatagatcggggtctggctggaatgattccacaaggtctgggaccagtggg
tggggaaatggcacaaacagcaaggctaatacaggtacaagttggggggaatctttaaag
ccaggcccccaacaaaattgggctaataaaccccaggacaacaatgtgagtaactgggga
ggagctgcttctgtaaaacagacggggtcagggtgggttggtgggccagttccagccaaa
caaaaagagaactgtgaggctactggctgggaagagccatctccaccgtccattcgccgc
aagatggaaatcgatgatggtacctcagcttggggcgacccaaattacaacaacaacaag
actgtaaacatgtgggatagaaataatcctgtaattcagagcagtaccacaaccaacacc
accaccactagcaccattatcaacaccaacatggttgaacctcagccatcgcaccagtca
agtgcccagccgaaccggtccccactgcttggcccaggctggggagagatgcctgctgtc
cacaccaagagcgaagcttcctggggagagccctcctccccttctgctgcagttgataat
ggcacttcggcgtgggggaagccccccagcagtgggaccgggtggggagagaatcctgct
gagccggcagggacctatggaagaacaaacgctccagctgctgccccagcactgtgcaaa
ccagcttcaaaatctatgcaagaaggctggggcagtggtggggatgaagtgaatctcagt
actagtcagtgggaagatgaagaaggagatatgtggaataacactgcttcacaagagagc
agctcctcctgtaattcctgggggaatgccccgaagaaaggacttcaaaagcccaaaaca
aatccgcgcttgtcccttggtactttctggagaactgaaaggaagagacttcttaaggat
tttgtgatagaaaagctgcacagagatcttttaaagggcatgaagacatctagcaagcag
gatgaggcctggatcatgaaccgtctgataaaacagctcacagacatgggcttccctaga
gagccagcagaagaggccttgaagagtaacagtatgaatctcgatcaggccatgagtaag
tatctgtgtgctctgctggaaaagaaggtggaaatggacaagcgtggaatgggagtgacc
gactataatggaatggtcaccaaaccccttggctgccgcccaccaccaatctccaaagag
tcttccatggaccgccccaccttccttgacaagctcaccctttctttctccaatcaggat
ggcggcctagtggaagagcccactacttcaccatttttgccttcaccaagcctgaagctc
cccctttcaaacagtgcactccctaatcagaccctgggcgggattgcctcagggctgggc
atgcaaaacttgaattcttctagacagataccgagtggcaatctgggtatgtttggcaat
agcggagcagcacaagccaggaccatgcaacagccgcagcaaccgccagtgcaacctctt
aattcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcaggttcaa
gcacagcttttgcagtttgcagcaaaaaacattggtctcagccctgcacagttaacctcg
ccaattaataatcctcagcatatgacgatgttgaaccagctctatcagctgcagctggcg
taccaacgtttacaaatccagcagcagatgttacaggctcagcgtaacgtttccggaccc
atgagacaacaggagcagcaagttgcacgtacaatcaataacatgcagcagcagatccag
cagcaccagcgccagctggcccaggccctgcttatgaagcagcagcctccccctccacat
ctatctttgcacccctctgcaggcaaatcagccatggatagcttttcaccccatccccag
gctcccggcctacctgacctgcagaccaaagagcaacagtcttcaccgaacacctttgct
ccttaccctcttgctggactgaacccgaacatgaatgtaaataacatggacattactggt
ggtttgtcagtgaaggacacttctcagtcccagtctcgccttcctcagtggacacacccc
aactcaatggataatctgtctagtgctgcttcttcgcttgaccagaactccagcaagcac
ggtgctatccctggaggtttgagtattggtcctccgggaaagtcctccctcgatgactcc
tacggccgctatgatctgatccagaacagtgagtctcctgccagcccacctgtagctgtt
cctcacagctggtcacgtgccaaatccgatagtgataagatttccaatggctccagcata
aactggccaccagagtttcacccaggagtgccgtggaaaggactgcagaatattgatcct
gaaaatgaccccgatgttactcctggcagtgttccaactgggcctaccataaacaccacg
atacaggatgtgaatcgctatctgctcaagagtggagggtcatccccaacatcatctcag
aatgccacgctgccttcatcgagtgcctggccgcttagtgcctccggctacagtagctct
ttcagcagcattgcatctgcacctagcattgcaggtaaactgtcagacatcaagtccacg
tggtcctctggcccgatctctcacacccaagcctctctgtcccacgaactctggaaggta
cccagaaacactacagctccgacaagacctcctccaggcttaaccaacaccaagccatcc
tccacgtggggtgccagtcccctgggctggaccagctcttactcctctggttctgcatgg
agtactgacagctcagggagaacaagcagctggctggttcttaggaacctcaccccccag
atcgatggttccacactgcggacactgtgtttgcagcacggccctctcatcacattccac
ttgaacctgacccaagggaatgctgtggtccgatacagttccaaggaggaagcagccaag
gcccagaagtctctgcacatgtgtgtcctgggcaacactaccatcctggcggagtttgct
ggtgaggaagaagtgaaccgtttcctggcgcaggggcaggcgctgccgcccacctccagc
tggcagtccaacactggatccaccccgagccgcctgggctcctcgggcagctcccacggg
ctggtgcgccccgacgccggccactggaaccccccgtgcctggggggcaagggcagcagc
gacctgctctggggaggggtgccccagtactccagcagcctttggggcccccccagcgcc
gacgacggcagagtcatcgggagccccacgcccctcaacaccctcctgccgggggatctg
ctcagcggggaatccatctag
DBGET
integrated database retrieval system
