Corvus cornix (hooded crow): 104694992
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Entry
104694992 CDS
T03546
Symbol
THOC5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104694992 (THOC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccw03019
]
104694992 (THOC5)
03041 Spliceosome [BR:
ccw03041
]
104694992 (THOC5)
Messenger RNA biogenesis [BR:
ccw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104694992 (THOC5)
Spliceosome [BR:
ccw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104694992 (THOC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
104694992
NCBI-ProteinID:
XP_039417168
LinkDB
All DBs
Position
15:12383854..12398208
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AA seq
704 aa
AA seq
DB search
MSSESSKKRKPKVIRTDGVPAEGKRGKGDADQETQTLLWRASTRLEDPSGICMDARYYSE
ESEVDLRDPIKDYELYRETCQELQRLMAEIQELKSRGIKENASEIDERRVQSCVHFMTLK
KLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIEL
VSLEEFYKEAPPEISRPAITLTEPHQQTLARLDWELEQRKRLAEKYKECLTSKEKILKEI
EVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYG
QACDKKLVVAIEGSVEEAKALYKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQLDDKRKE
MLKRHPLSVTLDLKCKDENVLHLTFHYLMNLNVMTVKAKVTTAVEMTTAISAGDLLSPDS
LLNCLYPGDHGRKTPNPANQFQFDKVGILTLSDYVTELGHPYVWVQKLGGLHFPKDQPQH
TVAADNSLSASHMELTVKLLRSRLQSRLALHKQFASLEHGVVPVSSECQQLFPTKIVSRL
VKWTAIPYEDYAELPYTKDVIEAGLAEDTHLYYMALIERGTAKLQAAVVLNPGYSTLPPV
FSLCLNWKGERNSSNDDNIRAMESEVNVYYKELWGPKPGYQLLTNQLQRLCMVLDVYLET
EPHDPSVEGPKEFPQEKMCLRLVRGPLRLKPFKFNYPQGFFSHR
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgagtccagcaagaagaggaagcccaaggtgatccgcacggacggggtccca
gccgagggcaagcggggcaagggcgacgctgaccaggagacacaaacgctcctctggaga
gcaagcacaaggctggaggatccctcagggatttgcatggatgccaggtactacagcgag
gagagcgaggtggatctgcgcgaccccatcaaggactacgagctctacagggagacctgc
caggagctccagaggctcatggcagagatccaggagctgaagagccggggcatcaaggaa
aatgcctcggagatcgacgagcggcgcgtccagagctgtgtgcacttcatgaccctgaag
aagctgaaccgcctggctcacatccggctgaagaaaggcagggaccagacccacgaggca
aagcagaaggttgatgcctatcacctgcagctccagaacctgctctacgaggtgatgcac
ctgcagaaagagatcaccaagtgcctggagttcaagtccaaacatgaggagatcgagctg
gtgagcctggaggagttctacaaagaggccccccctgaaatcagccgccctgccatcacc
ctgactgagccccaccagcagaccctggcccgcctggactgggagctggagcagcgcaag
aggctggcagagaagtacaaggagtgcctgaccagcaaggagaagatcctgaaggagatc
gaggtgaagaaggaatacctgagcagcctccaacctcgactcaacagcatcatgcaggcc
tccctgccagtccaggagtacctgttcatgcccttcgaccaggcacacaagcagtacgag
accgcccggcacctcccgccgccgctctacgtcctctttgtccaagccagcgcctacgga
caggcctgtgataagaagctggtggtggccattgaagggagcgtggaggaagccaaagcc
ctttacaagccaccagaggactcgcaggatgatgagagcgattccgacgcggaggaggaa
cagaccacgaagcggcgcaggcccaccctgggcgtgcagctggacgacaaacgcaaggag
atgctgaagcgacatcccttgtccgtcaccctcgacctgaagtgcaaagatgagaacgtg
cttcacctgaccttccactacctgatgaacctcaacgtcatgacagtgaaagccaaggtg
accactgctgtggagatgaccacggccatcagtgctggggacctgctctccccagactcc
ctcctcaactgcctttatccaggggaccacgggaggaaaacacccaacccggccaaccag
ttccagttcgataaagtgggcatcctgaccctgagtgactacgtgacagagctgggacac
ccctacgtgtgggtgcagaagctgggtggcctgcatttccccaaggatcagcctcagcac
acggtggctgctgacaactccctgagtgccagccacatggagctgacggtgaagctgctc
cggagccgcctgcagtcccgcctggccctgcacaagcagtttgcatccctcgagcacggc
gttgtgcctgtgtccagcgagtgccagcagctcttcccgaccaagatcgtctcgcgcctg
gtgaagtggacagccattccctacgaggattatgccgagctgccctacactaaggatgtg
atagaggctggcttggctgaagacactcacctctactacatggccctgatagagagggga
acagccaagctccaggcagccgtggtgctgaaccccgggtattccacgctgcctcccgtc
ttcagcctgtgcctcaactggaagggagagcggaacagcagcaacgacgacaacattcgg
gccatggagagtgaggtcaatgtctactacaaggagctgtgggggcccaaaccgggctac
cagctcctcaccaaccagctgcagcgcctgtgcatggtgctggacgtgtacctggagaca
gagccccacgatcccagcgtggaggggcccaaggagttcccccaggagaagatgtgtctg
cgcctggtcaggggtcccctgcgcctgaagcccttcaagttcaactacccccaggggttc
ttcagccatcgctga
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