Clostridioides difficile CD196: CD196_1089
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Entry
CD196_1089 CDS
T00997
Name
(GenBank) putative penicillin-binding protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
cdc
Clostridioides difficile CD196
Pathway
cdc00550
Peptidoglycan biosynthesis
cdc01100
Metabolic pathways
cdc01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
cdc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CD196_1089
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
CD196_1089
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cdc01011
]
CD196_1089
Enzymes [BR:
cdc01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
CD196_1089
Peptidoglycan biosynthesis and degradation proteins [BR:
cdc01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
CD196_1089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
DUF3969
Motif
Other DBs
NCBI-ProteinID:
CBA62071
UniProt:
A0A0H3N5P7
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All DBs
Position
1285796..1287460
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AA seq
554 aa
AA seq
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MSKKKTPFLKKVGKRSWCIFTIILIIYSVLIYRLVDIQVLKGDKYKQSVESQSVEKVELN
SGRGIIYDRNNKKLTDTSKSQVLIVEKEKLNNNYKILELIKKATKMNDLDIYKAVQEQLT
RPIIQIQTKNIDKSMKKELEKNGIMVEEKTMRYAKDGLLSHTIGYIKEDDKSGQSGIEKS
MDSVLRNSNEKYISAFKAGDAGNEKSLNILKGSVKTVDNKDKDRHLKTTIDYNIQKKLEQ
ILNKEENPTAAIISEASTGEILAMCSRPNFDQNDISKSLKGKNGEFENRVIKATYPPGSV
FKMVVLFSALENGVIDENYTYNCTGKTKVGNTNEILRCNKRDGHGFQNLRQAFSNSCNPA
FLDIAMKLGKEKILKSAEKLHLFEKVDIGLDEEKIREAPKNISIRNLAIGQENIEFTPLQ
INQMTQIIANNGTFKPLYLYKSLVDNNMNTIKTYKSSKKEELISPYVCTQVKEYMKSVSR
IGTAKDLKDIEGGCGVKTGTAQSSLNKKAIDHGWITGFYPEERPKYVITVLVEGTQKGNK
SATPIFKEICESIK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaagaagactccatttttgaaaaaagtgggaaagagaagctggtgtatattt
actataattttaataatttatagtgttttaatttataggctagttgatatacaagtatta
aaaggtgataaatacaaacaaagtgttgaatcacaaagcgttgagaaagtcgagttaaat
agtggaagaggaataatctatgatagaaacaacaagaagcttacagatacaagtaaatct
caggtattaattgttgaaaaagaaaaattaaataataactataaaattttggaacttatt
aagaaagctactaagatgaatgatttagatatatataaagctgtacaagagcaattgaca
cgccctataatacagattcagactaaaaatatcgataagagtatgaaaaaagaacttgag
aaaaatggaataatggtagaagaaaaaactatgaggtacgcaaaagatggtttattatca
catacaataggatatataaaagaagatgataaatcaggtcaatcaggaattgaaaagagt
atggatagtgtacttagaaattcaaatgaaaagtatataagtgcttttaaagctggagat
gcaggaaatgaaaaatctctaaacatactaaagggaagtgtaaaaactgttgataataag
gataaagatagacatctaaaaactactattgattataacattcaaaaaaaattagaacaa
atactaaataaagaagaaaatcctacagcagcaataatctcggaagcatctacaggtgaa
attcttgcaatgtgctctagacctaattttgaccaaaatgacatatcaaaaagtttaaaa
ggaaaaaatggggaatttgaaaatagagttataaaagcgacatatccaccagggtctgta
tttaagatggtagttttattttctgcacttgaaaatggtgttatagatgagaactatact
tacaactgtacaggtaagactaaagttgggaatactaatgaaatactgcgatgtaataaa
agagatggtcatggtttccaaaacttaagacaagctttttctaattcatgcaatcctgca
tttttagatatagctatgaaacttggaaaagaaaagatactcaaatctgctgaaaaatta
catttatttgaaaaggttgatattggtcttgatgaagaaaaaattagagaagctccaaaa
aacatatcaataagaaatttagctataggtcaagaaaatatagaatttacaccacttcaa
ataaatcaaatgactcaaataatagctaataatggaacattcaaaccactatacttatat
aaaagtcttgtggacaataatatgaatacaataaaaacttataagtcttcaaaaaaagaa
gaacttatttctccttatgtgtgtacacaagttaaagaatatatgaagtctgtatctagg
attggtacagctaaagacctaaaagatattgaaggtggttgtggagttaaaactggtaca
gctcaaagtagtttaaataaaaaagctatagaccacggatggataacaggattttatcct
gaagaaagacctaagtatgtaataactgtgttagtagaaggaactcaaaaaggaaataaa
tctgcaacacctatatttaaggaaatatgtgaaagtataaaataa
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