Clostridioides difficile CD196: CD196_2718
Help
Entry
CD196_2718 CDS
T00997
Name
(GenBank) putative sigma-54 dependent regulatory protein
Organism
cdc
Clostridioides difficile CD196
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PrpR_N
Sigma54_activ_2
PAS
HTH_8
PAS_9
AAA_5
AAA_2
PAS_8
Mg_chelatase
AAA
AAA_19
Bac_DnaA
PAS_10
HTH_7
TrkA_N
AAA_7
AAA_22
PAS_4
HTH_30
Motif
Other DBs
NCBI-ProteinID:
CBA65249
UniProt:
A0A0H3N5D3
LinkDB
All DBs
Position
3193641..3195554
Genome browser
AA seq
637 aa
AA seq
DB search
MKYGGIIMKEILVIAPTKGTYEKSIHIVKKNKYTNIDVVFGNLKEGIPLAEKSINHGTRI
IISRGGTYNMLKATYNIPIVEIKVDAYDIIKSYKEVKNSNEPFGIIGFNNVIYGFDIIEE
ILNKKITMIEIEKEEEIYDAIEKYRKKGINTYIGDTTVAHIVKRLNCKGILIESREENIL
RAIQQAEQILEATKDEQKRRLQIEAMTDFVHDGIITVDKNFKITLFNKSAEKIFGIKKEN
ALYHNVVDVIPNTVLPQVVETMEPQIGEIQNIGSTKIITNRVPIIVDGQIQGAVSTFQDS
KEISSFEHTIRRSLLSKGLSAKYTFDNIIHASEKTKDCIELAKKYACYDTPMIITGESGV
GKELFCQSIHNYSKRKNAPFVAVNCAAIPPSLIESEFFGYEEGSFTGARKKGKAGVFELA
HEGTIFLDEISEIPLELQGRLLRVLQEKQVMRIGGDKVIPIDVKIICASNKDLKNMMRNG
LFRQDLYFRINILTLYLPSLKERKEDIIKLSEFFIHKYSSKYNKTPLIITPNIKKALLER
EYEGNIRELEGMMERAVIVESFDSILLEKVSNEYTNNIVDKDNSDFECSNLDLKTLEKKY
IYKIYNENNRNTTKTCEILKITRSTLWRKLKEIEDDV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatggaggaattattatgaaagaaatactcgttattgctcccactaaaggaacc
tatgaaaaatcaattcacatagttaaaaaaaacaaatatacaaatattgatgttgtattt
ggcaatctaaaagaaggtatacctcttgctgaaaaaagtattaatcatggtactagaatt
atcataagcagaggtggaacttacaatatgttaaaagctacttacaatatacctatagtt
gaaattaaagtagatgcttatgatattataaaaagttacaaagaggtaaaaaattccaac
gaaccatttggaataattggatttaataatgtcatctacggtttcgatattatagaagaa
atattgaataagaaaataactatgattgaaattgaaaaagaagaagaaatttatgatgct
atagaaaagtacagaaagaaaggtataaacacatatataggagataccactgttgcacat
attgttaagagacttaattgtaagggaatattaatcgaatctagagaagaaaacatactt
agagccattcaacaagcagaacaaatactcgaagcaaccaaggatgaacaaaaaagaaga
ttacagatagaagctatgacagattttgtacatgatggaataataacagttgataaaaat
tttaaaataacattatttaataagagtgctgaaaaaatatttggtataaaaaaagaaaat
gcactttatcataatgttgtagatgttatcccaaacacagttcttccacaagtagttgag
actatggaacctcaaattggtgaaatacaaaatatagggagtacaaaaattattacaaat
agagttccaataattgttgatggccagattcaaggggctgtttcaacatttcaagatagc
aaggagataagttcttttgaacatacaataagaaggagcttattaagcaaaggtctatct
gctaaatacacttttgataatataattcatgctagtgaaaagacaaaagattgtatagaa
cttgcaaaaaaatatgcttgttatgatactcctatgattattactggagaatctggagtt
ggtaaagaattattttgtcaaagtatacataactatagtaagcgtaaaaatgcacctttt
gttgctgtaaattgtgctgccatacctccatctctaatagagagtgagttttttggttat
gaggaaggttcatttacaggtgctagaaaaaaaggtaaagcaggtgtattcgaactagca
catgaaggtacaatcttcctagacgaaataagtgaaatccctcttgaacttcaaggtcga
ttattgagggtattgcaggaaaaacaagttatgagaattggtggtgataaagttattcct
atagatgtaaaaattatctgtgcttcaaataaagacttaaaaaatatgatgcgcaatggt
ttatttagacaagacctttattttagaataaatatactaacattatatcttccttcatta
aaagaaagaaaagaagatattataaaattatcagaattttttatacataaatattcaagc
aaatacaataaaacgcctttaattatcactccaaatattaaaaaggcacttcttgaacga
gaatatgaaggtaatataagggaattggaaggtatgatggaaagggctgttattgtggaa
tcatttgactcgattttattagaaaaggttagcaatgaatatacaaataatatagttgat
aaagataatagtgattttgaatgcagtaatttagatttaaaaactttagaaaaaaaatat
atctataaaatttataacgaaaataatagaaatactacaaaaacctgtgaaattctaaag
ataactcgctccactctatggcgtaagttaaaagaaatagaagatgatgtttaa
DBGET
integrated database retrieval system
