Clostridioides difficile R20291: CDR20291_2765
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Entry
CDR20291_2765 CDS
T00998
Name
(GenBank) putative sigma-54 dependent regulatory protein
Organism
cdl
Clostridioides difficile R20291
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PrpR_N
Sigma54_activ_2
PAS
HTH_8
PAS_9
AAA_5
AAA_2
PAS_8
Mg_chelatase
AAA
AAA_19
Bac_DnaA
PAS_10
HTH_7
TrkA_N
AAA_7
AAA_22
PAS_4
HTH_30
Motif
Other DBs
NCBI-ProteinID:
CBE06327
UniProt:
A0A9R0BMM9
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Position
3274170..3276083
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AA seq
637 aa
AA seq
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MKYGGIIMKEILVIAPTKGTYEKSIHIVKKNKYTNIDVVFGNLKEGIPLAEKSINHGTRI
IISRGGTYNMLKATYNIPIVEIKVDAYDIIKSYKEVKNSNEPFGIIGFNNVIYGFDIIEE
ILNKKITMIEIEKEEEIYDAIEKYRKKGINTYIGDTTVAHIVKRLNCKGILIESREENIL
RAIQQAEQILEATKDEQKRRLQIEAMTDFVHDGIITVDKNFKITLFNKSAEKIFGIKKEN
ALYHNVVDVIPNTVLPQVVETMEPQIGEIQNIGSTKIITNRVPIIVDGQIQGAVSTFQDS
KEISSFEHTIRRSLLSKGLSAKYTFDNIIHASEKTKDCIELAKKYACYDTPMIITGESGV
GKELFCQSIHNYSKRKNAPFVAVNCAAIPPSLIESEFFGYEEGSFTGARKKGKAGVFELA
HEGTIFLDEISEIPLELQGRLLRVLQEKQVMRIGGDKVIPIDVKIICASNKDLKNMMRNG
LFRQDLYFRINILTLYLPSLKERKEDIIKLSEFFIHKYSSKYNKTPLIITPNIKKALLER
EYEGNIRELEGMMERAVIVESFDSILLEKVSNEYTNNIVDKDNSDFECSNLDLKTLEKKY
IYKIYNENNRNTTKTCEILKITRSTLWRKLKEIEDDV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatggaggaattattatgaaagaaatactcgttattgctcccactaaaggaacc
tatgaaaaatcaattcacatagttaaaaaaaacaaatatacaaatattgatgttgtattt
ggcaatctaaaagaaggtatacctcttgctgaaaaaagtattaatcatggtactagaatt
atcataagcagaggtggaacttacaatatgttaaaagctacttacaatatacctatagtt
gaaattaaagtagatgcttatgatattataaaaagttacaaagaggtaaaaaattccaac
gaaccatttggaataattggatttaataatgtcatctacggtttcgatattatagaagaa
atattgaataagaaaataactatgattgaaattgaaaaagaagaagaaatttatgatgct
atagaaaagtacagaaagaaaggtataaacacatatataggagataccactgttgcacat
attgttaagagacttaattgtaagggaatattaatcgaatctagagaagaaaacatactt
agagccattcaacaagcagaacaaatactcgaagcaaccaaggatgaacaaaaaagaaga
ttacagatagaagctatgacagattttgtacatgatggaataataacagttgataaaaat
tttaaaataacattatttaataagagtgctgaaaaaatatttggtataaaaaaagaaaat
gcactttatcataatgttgtagatgttatcccaaacacagttcttccacaagtagttgag
actatggaacctcaaattggtgaaatacaaaatatagggagtacaaaaattattacaaat
agagttccaataattgttgatggccagattcaaggggctgtttcaacatttcaagatagc
aaggagataagttcttttgaacatacaataagaaggagcttattaagcaaaggtctatct
gctaaatacacttttgataatataattcatgctagtgaaaagacaaaagattgtatagaa
cttgcaaaaaaatatgcttgttatgatactcctatgattattactggagaatctggagtt
ggtaaagaattattttgtcaaagtatacataactatagtaagcgtaaaaatgcacctttt
gttgctgtaaattgtgctgccatacctccatctctaatagagagtgagttttttggttat
gaggaaggttcatttacaggtgctagaaaaaaaggtaaagcaggtgtattcgaactagca
catgaaggtacaatcttcctagacgaaataagtgaaatccctcttgaacttcaaggtcga
ttattgagggtattgcaggaaaaacaagttatgagaattggtggtgataaagttattcct
atagatgtaaaaattatctgtgcttcaaataaagacttaaaaaatatgatgcgcaatggt
ttatttagacaagacctttattttagaataaatatactaacattatatcttccttcatta
aaagaaagaaaagaagatattataaaattatcagaattttttatacataaatattcaagc
aaatacaataaaacgcctttaattatcactccaaatattaaaaaggcacttcttgaacga
gaatatgaaggtaatataagggaattggaaggtatgatggaaagggctgttattgtggaa
tcatttgactcgattttattagaaaaggttagcaatgaatatacaaataatatagttgat
aaagataatagtgattttgaatgcagtaatttagatttaaaaactttagaaaaaaaatat
atctataaaatttataacgaaaataatagaaatactacaaaaacctgtgaaattctaaag
ataactcgctccactctatggcgtaagttaaaagaaatagaagatgatgtttaa
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