Cellulomonas dongxiuzhuiae: KKR89_04085
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Entry
KKR89_04085 CDS
T08574
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cdon
Cellulomonas dongxiuzhuiae
Pathway
cdon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KKR89_04085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cdon03400
]
KKR89_04085
Enzymes [BR:
cdon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KKR89_04085
DNA repair and recombination proteins [BR:
cdon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KKR89_04085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QWC16826
LinkDB
All DBs
Position
894955..896523
Genome browser
AA seq
522 aa
AA seq
DB search
MRDFTRTAEPAGAAPEPSDGPERRFVVQRHRARRLHYDVRFEIDGVLVSWAVPKGPTLDP
AARRMAVHVEDHPLEYEAFEGVIPHGQYGGGDVIVWDRGTWRPYKTDDPAAEVRDGQLHA
ELSGERLRGKFLLVRRDDARSGKEQWLMFHKRDEHAVDGWDAEDHPTSVVSGRTNDEVAA
APDRLWRSGVPADRAEVETHPAVPDVAGPSDDELAALDDLGASGTWEVFGRRLRVTNLDK
ELFPGRDDEPPVTKRELLRYAARIAPVALPYLAGRPLNMHRFPQGAATRGFWHKQLPDHA
PDWVPRWDRPDADPGESTTYLVVDEPAALVWAANFGALEWHAWTSRTSAPDLPTYALIDL
DPGTSTAWEDVLLLARLHRDAFAHVGVQAFPKLTGRRGIQVWVPVTVGPSFDETRAWVER
LSRTVGKVVPDLVSWRWEVRERGGQARLDYTQNAINKTLVAPYSPRAAAGAPVSAPITWD
ELDEPWLRPDAFTVRTVLERVAERGDPFRGALTGDQVLPPLR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacttcacgcgcacggccgagcccgccggtgcggccccggagccgtccgacgga
cccgagcggcggttcgtggtgcaacggcaccgggcccgccggttgcactacgacgtgcgg
ttcgagatcgacggcgtcctggtcagctgggccgtgccgaagggcccgacgctggacccc
gccgcgcgccgcatggccgtgcacgtcgaggaccacccgctggagtacgaggcgttcgag
ggcgtgatcccgcacgggcagtacggcggcggtgacgtgatcgtgtgggaccgcgggacg
tggcgtccgtacaagaccgacgacccggcggccgaggtccgcgacgggcagctgcacgcc
gagctctccggcgagcggctgcgcgggaagttcctgctcgtgcgccgcgacgacgcacgc
tccggcaaggagcagtggctcatgttccacaagcgcgacgagcacgccgtcgacggctgg
gacgccgaggaccacccgacgtccgtggtgtccgggcgcaccaacgacgaggtcgcggca
gcgcccgaccggctgtggcgctcgggcgtgccggccgaccgcgcggaggtcgagacgcac
ccggccgtgccggacgtcgcgggcccgtcggacgacgagctcgccgcgctcgacgacctg
ggcgcgtcgggcacgtgggaggtcttcgggcgtcggctgcgcgtcaccaacctcgacaag
gagctgttcccgggtcgcgacgacgagccgccagtcaccaagcgcgagctgctgcgctac
gcggcgcgcatcgcccccgtcgcgctgccgtacctcgcgggccgcccgctcaacatgcac
cgcttcccgcagggcgccgcgacgcgcgggttctggcacaagcagctccccgaccacgcg
cccgactgggtgccccgctgggaccggcccgacgcggaccccggcgagtcgaccacgtac
ctcgtcgtcgacgagcccgcggcactcgtgtgggccgcgaacttcggtgcgctcgagtgg
cacgcgtggacgtcgcggaccagcgcacccgacctgccgacgtatgccctgatcgacctc
gaccccggcacctcgacggcgtgggaggacgtcctgctgctcgcccggctgcaccgcgac
gcgttcgcgcacgtcggcgtgcaggcgttccccaagctcacgggccgccgcggcatccag
gtgtgggtgccggtcaccgtcgggccgtcgttcgacgagacgcgcgcgtgggtcgagcgg
ctctcgcgcaccgtcggcaaggtcgtgcccgacctggtgagctggcgctgggaggtgcgc
gagcgcggcggccaggcgcgcctggactacacgcagaacgcgatcaacaagacgctcgtc
gcgccgtacagcccgcgggccgccgcgggcgcgccggtctccgcgccgatcacgtgggac
gagctcgacgagccgtggctgcgtcccgacgcgttcacggtccgcaccgtcctggagcgc
gtcgccgagcgcggcgacccgttccgcggcgcgctcacgggcgaccaggtgctcccgccc
ctgcgctga
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