KEGG   Chelatococcus daeguensis: BOQ54_10250Help
Entry
BOQ54_10250       CDS       T04583                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cdq  Chelatococcus daeguensis
Pathway
cdq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cdq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BOQ54_10250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cdq03400]
    BOQ54_10250
Enzymes [BR:cdq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BOQ54_10250
DNA repair and recombination proteins [BR:cdq03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BOQ54_10250
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: APF37660
LinkDB All DBs
Position
complement(2182358..2184898)
Genome map
AA seq 846 aa AA seqDB search
MAEVRHLLREYRERRDFTRTAEPDVTAEARIGEGLLFVVQKHAATRLHYDFRLEWQGVLK
SWAVTRGPSLDPADKRLAVRTEDHPLAYGDFEGIIPKGQYGGGTVMLWDRGTWEPVGDPD
EGLRRGKLTFRLHGERLSGEWALVRMAPKPGDKRENWLLIKHQEETSGRRRPPDILARHT
RSVASGRTMEEIAAGGRTIAPEDVAPERRARRPAAKAAEKKAGKGGRGGHALPRWVEPQL
ATLVDAAPEGGQWLSEMKYDGYRALVAIGGGTCRVYTRNGKDWTDRFPEVAQAAGRLDTS
GTLIDGEIVAFDEKGKTDFSTLQAALQEGGRGLTFFAFDLLWLDGEDVRGRPLTERKDLL
QQLLGEAGPPLIYSTHVVGNAPEVNRRLCAAGHEGIVAKRAEDAYRSGRGRSWLKVKCGA
RQEFVIGGYRPSDKKGRTVASLLIGVNEGGKLVYKGRVGAFEGDHLARLEQLLASRGRKT
SPFAELPRDIARRARFVRPDIVVEVGFTEFTREGAVRHGVLKGIREDKPAREVVLETPRG
TAMQEHEARDVIAGIRLSNPDKVLFAEQGVTKADLAAHYERVAGRILPFVSERLLSLVRC
PEGAGTQCFFQKHGNKTVARELKRREITESDGERGVYLYVDDLAGLVAGVQMGTLEYHIW
GSRIDRLDQPDRLVFDLDPDEGLDFAAVRAAAFDLRERLATLGLQTVPLLTGGKGIHVIA
PLVRRADWPMVKAFARGFARLIAGENPDRYVAQAAKAKRAGRIFVDWLRNERGSTAIAPY
STRAKKNAPVATPVGWDELRTIDTAQAFTIADMEKRLSMPDPWAGEAEGRQAITKTMLGK
VGAEEG
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atggccgaggtgcggcatctgctcagggaataccgggagcggcgggatttcaccaggaca
gccgaacccgacgtcacggccgaggcccgcatcggcgaggggctgctcttcgtcgtgcag
aaacatgccgcgacgcgcctccactacgatttccgcctcgaatggcagggtgttctgaag
agctgggcggtgacgcgcggcccgagcctcgaccctgccgacaagcggctcgcggtgcgg
accgaggaccatccgctcgcctatggcgacttcgagggcatcattcccaagggccagtac
ggcggcggcacggtcatgctgtgggaccgcggcacctgggagcctgtcggcgaccctgac
gagggcctgcgccgcggcaagctgacctttcgccttcacggcgagcggctgtcgggcgaa
tgggccctcgtgcgcatggcgccgaagccgggcgacaagcgcgagaactggctgctgatc
aagcatcaggaggaaacctccggccggcgccgcccgccggacatcctggcgcgccatacc
cgcagcgtcgcctccgggcgcacgatggaggaaatcgccgctggggggcgcacgatcgcc
cccgaggatgtggcgccggagcgacgcgcccggcggccggcggcgaaggctgcggagaaa
aaggccggcaagggcggccggggcgggcatgcgctgccgcgctgggtggagccgcagctc
gccacgctggtcgacgccgcgcccgagggcgggcaatggctgtcggagatgaaatacgac
ggctaccgcgccctggtcgccatcggcggcggcacctgccgcgtctatacccgcaacggc
aaggactggaccgatcgcttccccgaggtcgcgcaggcggccggccgtctcgacacgtca
ggcaccctgatcgatggcgagatcgtcgccttcgacgagaagggcaagaccgacttttcc
accctgcaggcggcgctgcaggagggtgggagaggactgacgttcttcgccttcgacctt
ctgtggctcgacggcgaggacgttcgcgggcgtcccctcaccgagcgcaaggacctgctg
cagcagctcctcggcgaggccgggccgccgctcatctattcgacgcatgtcgtcggcaat
gcgcccgaggtgaaccggcggctgtgcgcggccgggcacgaggggatcgtcgccaagcgg
gcggaggacgcctaccgctccggccgcgggcgcagctggctgaaggtgaaatgcggagcg
cgccaggagttcgtcatcggcggctacaggccgagcgacaagaagggccgcaccgtcgcc
tcgctgctgatcggcgtcaacgagggaggcaagctcgtctacaaaggacgggtgggggcc
ttcgagggcgaccatctggcgcggctggagcagctcctcgccagccgcggccgcaagacc
tcgcccttcgccgagctgccgcgcgatatcgctcgacgggctcgcttcgtgcggccggac
atcgtcgtcgaagtcggctttactgaattcacgcgcgaaggcgccgtccgccacggcgtt
ctgaagggcatccgggaggacaagccggcgcgcgaggtggtgttggagacacccaggggg
acggccatgcaggagcacgaagcgcgggatgtcatcgccggcatcaggctgtccaacccg
gacaaggtgctcttcgccgagcagggcgtgacgaaggccgatctggcggcccattacgag
cgcgtggccgggcggatcctgcccttcgtctcggaacgtcttctcagcctcgtgcgctgc
cccgagggggccggcacacagtgcttcttccagaagcacggcaacaagaccgtggcccgc
gagctcaagcgccgcgagatcaccgagagcgacggcgagcgcggcgtctatctctatgtc
gacgacctcgcgggtctcgtcgccggcgtgcagatggggacgctcgaatatcacatctgg
ggctcgcgcatcgatcgcctcgaccagccggaccggctggtcttcgatctcgatcccgac
gaggggctcgacttcgccgccgtgcgcgccgccgccttcgacctgcgcgagcggctcgcg
acgctcgggcttcagaccgtgccgctgctgaccggcggcaagggcatccatgtcatcgcc
cccctcgtgcgccgggcggattggccgatggtcaaggccttcgcccgcggcttcgcccga
ctcatcgccggggaaaatccggaccgttatgtcgcccaggccgcgaaggccaagcgggcc
ggccgcatcttcgtcgactggctgcgcaacgagcgcggctccaccgccatcgcgccctat
tcgacgcgggcgaagaagaacgcgccggtcgcgacccctgtgggctgggacgagttgcgg
accatcgacaccgcccaggccttcaccattgccgacatggagaaacgcctgtcgatgccg
gatccctgggcgggtgaagccgaggggcgccaggcgatcacgaagaccatgctcgggaag
gtgggtgccgaggagggctga

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