KEGG   Chelatococcus daeguensis: BOQ54_15890Help
Entry
BOQ54_15890       CDS       T04583                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cdq  Chelatococcus daeguensis
Pathway
cdq03030  DNA replication
cdq03410  Base excision repair
cdq03420  Nucleotide excision repair
cdq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cdq00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    BOQ54_15890
   03410 Base excision repair
    BOQ54_15890
   03420 Nucleotide excision repair
    BOQ54_15890
   03430 Mismatch repair
    BOQ54_15890
Enzymes [BR:cdq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BOQ54_15890
    6.5.1.6  DNA ligase (ATP or NAD+)
     BOQ54_15890
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BOQ54_15890
DNA replication proteins [BR:cdq03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BOQ54_15890
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BOQ54_15890
DNA repair and recombination proteins [BR:cdq03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BOQ54_15890
   NER (nucleotide excision repair)
    Other NER factors
     BOQ54_15890
   MMR (mismatch exicision repair)
    Other MMR factors
     BOQ54_15890
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID: APF38619
LinkDB All DBs
Position
3373248..3374936
Genome map
AA seq 562 aa AA seqDB search
MNDFAELLDRLAFEPRRNAKLRLMEDFFRTTPDPERGYALAALTGGLSFRNAKPGLVRAL
IAERTDPVLFALSYDYVGDLSETVALMWPPPSQAGTGHNAPPPRLADVVEGLSMAAKTEL
PGLLARWLDALDETGRWALLKLITGALRIGVSARLAKTAVAGLGRVDPNAVEELWHGLTP
PYEPLFAWLEGRADRPEGLVVAPFRPPMLSHPLDEEELSRLDPAEFCAEWKWDGIRIEAV
RELTPEGRRIVRLYSRTGEDITGSFPDLCEALIAEDAFVGALDGELLVLRGGRVESFNVL
QQRLNRKAITPRLMQEFPAHIRAYDLLGEGEEDLRPLPFAERRRRLEALVARLAGGRVDL
SPLVPFVSWEELVAARARPSEAGAGIDAEAVEGVMLKRRDSPYVPGRPKGLWYKWKHDPH
LVDAVLMYAQRGHGKRSSYYSDYTFGLWRSGPEGEELVPVGKAYFGFTDEELKELDRFVR
RETVNRFGPVREVVHTGERGLVLEVAFEGVQQSTRHKSGVAMRFPRISRIRWDKPPREAD
RLDYLAGLLPRGETMKTRAGKT
NT seq 1689 nt NT seq  +upstreamnt  +downstreamnt
atgaacgacttcgcagagttgctcgaccgcctcgccttcgagccgcgccgcaacgccaag
ctgcggctgatggaggacttcttccgcacgacgccggatcccgagcgcggctatgccctc
gccgccctcacgggcgggctctccttccgcaacgccaagcccggtctcgtgcgcgcgctc
attgccgagcgcaccgatccggtgctcttcgccctctcctacgactatgtcggcgacctg
tccgaaaccgtcgctctcatgtggccgccgccatcgcaggcgggcactggccacaacgcc
ccgccgccgcgcctcgccgacgtggtcgagggcctctcgatggcggcgaagaccgaactg
cccggccttctcgcgcgctggctcgatgcgctcgacgagaccgggcgctgggcgctgctc
aagctcatcaccggggcgctgcgcatcggcgtctccgctcgcctcgccaagacggccgtc
gccgggctcggcagggtcgatcccaatgcggtcgaggaattgtggcacggcctgacgccg
ccctacgagccgctcttcgcctggctcgaaggtcgtgcggatcggccggaggggcttgtg
gtcgcccccttccgcccgccgatgctgtcgcacccgctcgacgaggaggagctttcgcgc
ctcgacccggccgaattctgcgccgaatggaaatgggacggcatccgcatcgaggccgtg
cgcgagctgacgccggagggccggcgcatcgtccggctttattcccgcaccggcgaggat
atcaccggctcctttcccgacctgtgcgaggccctcatcgcggaggacgccttcgtcgga
gcgctcgacggtgagcttctcgtcctgcgcggggggcgcgtcgagagcttcaatgtcctg
cagcagcgcctcaaccgcaaggcgatcacaccgcgcctgatgcaggaattccccgcccat
atccgcgcctatgacctgctcggcgagggcgaggaggatctgcgccccctgcccttcgcg
gagcggcgccggcggctcgaggcgctcgtcgcgcggctcgcgggcgggcgcgtcgacctc
tcccccctagtacccttcgttagctgggaggaactggtcgcggcgcgtgcccggccaagc
gaagccggcgccggcatcgatgccgaggccgtcgagggcgtcatgctcaagcgccgcgac
agcccctatgtccccggccggcccaagggcctgtggtacaagtggaagcacgacccgcac
ctcgtcgacgcggtgctgatgtatgcccagcgtggccacggcaagcgctcgtcctattat
tccgactacaccttcggcctgtggcgcagcgggcccgagggcgaggagctcgtgcccgtc
ggcaaggcctatttcggcttcaccgacgaggagctgaaggaactcgaccgcttcgtgcgg
cgggagacggtcaaccgcttcggcccggtgcgcgaggtcgtccacacgggcgagcgcggc
ctcgtgctcgaggtcgccttcgagggcgtccagcagtcgacgcgccacaagtccggcgtc
gccatgcgctttccgcgcatcagccgcatccgctgggacaagccgccgcgcgaggccgac
cggctcgactatctcgccggcctcctgccgcgcggggaaacgatgaagacgagggcgggg
aagacatga

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