Cellvibrio sp. KY-GH-1: D0C16_18610
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Entry
D0C16_18610 CDS
T06422
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ceg
Cellvibrio sp. KY-GH-1
Pathway
ceg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ceg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0C16_18610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ceg03019
]
D0C16_18610
03400 DNA repair and recombination proteins [BR:
ceg03400
]
D0C16_18610
Enzymes [BR:
ceg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0C16_18610
Messenger RNA biogenesis [BR:
ceg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0C16_18610
DNA repair and recombination proteins [BR:
ceg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D0C16_18610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
GATase_5
HEM4
Motif
Other DBs
NCBI-ProteinID:
QEY19113
UniProt:
A0A5J6PEA8
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All DBs
Position
4346263..4348182
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AA seq
639 aa
AA seq
DB search
MSSALQVLHESFKLPAFRPGQEAVINALLQGQSALAVFPTGGGKSLCYQLPALMLEGLTL
VVSPLIALMKDQVDALQALGIPAARLDSSLDKAATQAIYDGLYERRLKLLYVSPERLKNE
RFVQRLARSTISLLAIDEAHCISEWGHNFRPDYLLLADLARKLRVERVLALTATATPDVA
ADICRQFSIQPRHHIQTSFARPNLQLRVTPCTANQRQTILLERLHQQAPEAATIIYVTLQ
KTAEEIAQAINASGLRAAYYHAGLKDDERDQIQNAFMSGEVPIVVATIAFGMGIDKSNIR
AVYHFNLPKSIENYVQEIGRAGRDGNGSVCELLAVGDDVRVLENFSYGDTPAREGLAALV
RYLLAAGDVFDLSTYELSQRFDLRPLVLNTALTYLELRGVISALTPFYSEYKVQFIQPPE
IILANFDAARAQFLRQVFSAGRMGKKWLTLDIARVAIQLNEPKERIQKALDYLEEKSWIG
LSVANLRQVYANNQTITSPAEVHSLCDYLEQLFAQREARDIKRIARVVEFANNPACLSQQ
LMQYFGEADAPACGVCNHCTGTGAARVLVPVQAKLTERQSALLAAVKQEQHEPLLHSRQL
ARFLCGLPSPATSRSTLKNHPAFGALAEVSFSVVLAAAG
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgccttacaggtgttacacgaatcattcaaattgccggcttttcgccctggg
caagaggctgttatcaatgcattgctgcaggggcaatcagcgctggcggtattccctacc
ggtggaggcaaaagcctgtgttatcaattgccggccttgatgctggaaggtctgacactg
gtggtttcaccgctgattgccttaatgaaagatcaggtggatgcgctgcaggcattaggg
attcccgcagcgcggttggattcttcgctggacaaagcggcaacccaggcgatttatgat
gggctttatgagcggcgtttaaaattattgtatgtatcgcccgagcgcttgaagaatgag
cgctttgtgcagcggcttgcgcgttccacgattagtttgctggcgattgatgaggcgcac
tgtatttcggaatggggccataattttcgcccagattatttattgctcgcggatctcgcc
aggaaattgcgtgtggagcgagtactggcattaaccgcaacagcaacgcctgacgttgct
gcggatatttgccgacaattttccattcagccgcggcatcatatacaaaccagttttgcg
cggcctaatttgcaattgcgcgttacgccctgcacggctaatcaacgccaaacaatattg
ttggagcgcttacatcagcaggcgccagaagcggctaccattatttatgtcaccttgcaa
aaaacggcggaggaaatcgcgcaggccataaacgcttccggtttgcgggccgcttattat
cacgccggtttaaaagatgacgagcgcgatcaaattcagaatgcgtttatgagtggcgaa
gtcccgattgtggtggccaccatcgcatttggtatgggcatcgataaaagcaacatccgt
gcggtgtaccattttaatttgcccaagtcgatagaaaattatgtacaggaaattggccgt
gccgggcgcgatgggaatgggtctgtgtgtgaattgttggccgttggtgacgatgtgcgc
gtgctggaaaatttcagctacggcgatacgccggcgcgcgaaggcttggcggcattggtg
cgttatttattagccgcaggcgatgtgtttgatctttcaacctatgagctatcacagcgt
tttgatttgcgcccgctggtattaaatactgctttgacctatttggaactgcgcggggta
ataagtgcacttacgccgttttatagcgagtacaaagtacagtttattcagcctcctgaa
ataattcttgcgaactttgacgcggcgcgcgcgcaatttttgcgacaggttttttcggct
gggcgtatgggaaaaaaatggctaacgttggatattgcgcgggttgcaatccaactaaat
gagcctaaagaacgtatccaaaaagcgttggattatttggaagaaaaaagctggattgga
ttgtcagttgccaatttgcgccaggtttatgccaataatcaaacaataacatcccctgcc
gaagtgcactctctgtgcgattatctggaacaattatttgcccagcgcgaagctcgcgat
ataaaacgtatcgcccgcgtcgtggaatttgctaataaccccgcgtgccttagtcagcag
ttaatgcagtattttggtgaagccgatgcgcctgcgtgtggggtgtgtaatcactgtaca
ggcactggcgccgcgcgggttttggtacccgtgcaggccaaattgactgaacgccagtcg
gccttgcttgcggcagtaaagcaagagcagcatgagccgttgttgcattcccgccagctg
gcccggtttttatgcggcctacccagtccggccaccagtcgttctacgctaaaaaatcac
cccgctttcggcgcgttggctgaggtctcattttccgtggtattggccgcggcgggttaa
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