Caenorhabditis elegans (nematode): CELE_C14A4.4
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Entry
CELE_C14A4.4 CDS
T00019
Symbol
crn-3
Name
(RefSeq) Exosome complex component 10 homolog
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_C14A4.4 (crn-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_C14A4.4 (crn-3)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CELE_C14A4.4 (crn-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
3565889
NCBI-ProteinID:
NP_001379075
WormBase:
WBGene00000796
Ensembl:
WBGene00000796
LinkDB
All DBs
Position
II:<10588042..>10592652
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AA seq
876 aa
AA seq
DB search
MSGEESMPDEEQKQSEEEEEMIRKRTLAMRKKVEEIMRNGAGLVRESNGLPKAGADYELY
NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRVPDVGSSVEHYTECVIEAQDNIAERAA
TLHEALKKAELDEIVKVPEFITKAAPTNRKTEAEVSAAMRTFSANIGTVLAEKFRERREE
AAQMVVLEKPQKTYNISSDNSQAPFSSKLTVKHHAIEKRTGIVLHDDDESGRRDWISAET
ETEEEHPYIAEILHFKVPEAQLKSAECLKFTALKDTPLTMIDTKEKLEALTKTLNSVKEF
AVDLEHHQMRSYLGLTCLIQISTRDEDFIIDPFPIWDHVGMLNEPFANPRILKVFHGSDS
DVLWLQRDYGVHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLR
NAMINYAREDTHYLLYSYDMLREQLLKQDTKDLANVYSESSDLCIKVYKKPVFNPKGYLT
EIKFRFTLNTRQDYALTHLFKWRDVVARAEDESPHFVLPNHMMLSLSETLPRDVGGIYAC
CNPLPYFVKQRTGDILKIIVEARDVKLEKVGLSAKERNDAQEARGVMNDTMDHITSVLKS
KIDFSHTRFDEERGEIYIDKTDEGMDIELKDHKESLLSVLQTAEIPSVETMIVVEKGKKS
DNQKVKKLLNELDKFVTPFECYQMMMITKEKQEEEERKEAERKKLEEGDLPKTMFSHHDA
PINRKPEFDAKLLNVDTLKLVPDDPNKPKDPEPSPMEESSSEPQIFDPSRFTDDQLLSKK
AMKRKRDAARRNIDVSVVLGESSSSSDPKKKKSDDDAPVEDFDYEKADSSAFEKPVRDNN
ADFDPFHQKYRLKNKTKKNMAMKKSSNRQGTINYKK
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagaagaatcaatgcccgatgaagagcagaagcaatctgaggaagaagaggaa
atgataagaaaaagaacgttagcgatgaggaaaaaagtcgaagaaattatgagaaatggc
gccgggcttgttcgtgaatcaaatggtttgccgaaagctggtgcggattatgagctctac
aactcgtatccgacattcaacacgtttatgaagcgatccgagcagagattgaatgcactc
atgaacaaagtcaccaagtcaataggatgtgcaatgcgagttccagatgtcggttcatca
gtcgaacattacacagaatgtgttatcgaggctcaggacaacattgcagaacgtgcagca
actctccatgaagcgctgaaaaaagccgagctagatgagatagtcaaagttccagaattc
attacaaaagccgccccaacaaatcgaaaaaccgaagcagaagtttcagcggcaatgaga
acgttttcagcgaatattggaacggttttggcggagaagtttagagaacgaagagaagaa
gctgctcagatggttgtgttggaaaaaccacagaagacgtataacatcagttcggacaac
tcacaagctcctttttcttctaaattgactgttaaacatcatgccattgaaaaacgaacg
ggtattgttctccacgatgacgatgagtctggaagaagagattggataagtgctgaaaca
gaaactgaagaggaacatccatatatcgctgaaattcttcacttcaaagttccagaagct
cagctgaaatctgcagagtgtttaaaattcacagcattgaaggatactccattgacaatg
attgatactaaggagaagcttgaagcattaacgaaaactttgaattctgtaaaagagttc
gcagtcgacttggagcatcaccaaatgcgatcgtatcttggattgacctgccttattcaa
atttcaacaagagatgaagactttatcattgatcccttcccaatatgggatcatgttgga
atgctcaatgagccatttgcaaatccacgtattctcaaagtttttcacggttctgacagt
gatgttctctggctacaaagggattatggagttcatgttgttaatttatttgatacatat
gttgccatgaaaaagctgaagtatcctaaattcagtcttgcctacctcactctccgattt
gccgacgttgttctggacaaacaatatcaactggctgactggagagcacggcctctacga
aatgcgatgataaactacgcgagagaggatactcattaccttttgtatagttatgatatg
ctccgagagcaacttctgaaacaagataccaaggatttggccaacgtctactcagagtct
agcgatctttgcataaaagtatacaagaaaccagtgttcaatccgaaaggatatttgacg
gaaataaaattccgattcacactgaatactcgacaggactatgcacttacacatcttttc
aaatggagagatgtagtagctagagcagaagatgagagcccacattttgtacttccaaat
catatgatgctatcactttctgagacattaccacgagatgttggaggtatctacgcgtgt
tgtaacccgttaccgtactttgtgaaacagcgaactggtgatattttgaaaataattgtg
gaggccagagatgtgaagcttgagaaagtgggattgtcggcgaaagaaagaaatgatgca
caggaagcacgaggtgtaatgaacgatactatggatcatatcacttcagttttaaaatca
aaaatcgacttttcacacactagatttgacgaagaacgcggagaaatttatattgataag
acagatgaaggaatggatatcgagctgaaagatcataaagaatcattgttatcagtgctc
caaacggctgaaattccaagtgtggaaactatgattgttgtggaaaaaggaaagaaatcg
gataatcagaaagttaaaaagttgttgaatgaacttgacaaatttgtaactccatttgaa
tgttatcaaatgatgatgattacaaaagaaaagcaagaagaagaagagagaaaagaggct
gagagaaagaaattggaggaaggtgatctaccgaagactatgttctcacatcatgatgct
ccgattaatagaaaacctgaattcgatgcgaagcttctaaacgttgatacactgaagctg
gtcccagatgatccgaacaagccgaaagatccagaaccttcaccaatggaagaatcttca
tcggaacctcaaatcttcgatccatctcgttttaccgacgaccagctactgtcaaagaag
gcaatgaaaagaaagagagatgctgctcgacgaaatatagatgtttctgttgtgctcggc
gagtcgtcgagtagttcagatccaaaaaagaaaaaatctgatgatgatgctcccgttgaa
gattttgattatgaaaaagctgatagtagtgcatttgaaaaacctgttcgagacaacaac
gccgatttcgatccattccatcaaaaatatcgattgaagaacaagacaaagaagaatatg
gctatgaaaaaatcatcgaatcgacaaggaaccatcaactacaaaaaatga
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