Caenorhabditis elegans (nematode): CELE_C42C1.4
Help
Entry
CELE_C42C1.4 CDS
T00019
Symbol
vps-8
Name
(RefSeq) Vps8 domain-containing protein
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
CELE_C42C1.4 (vps-8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cel04131
]
CELE_C42C1.4 (vps-8)
Membrane trafficking [BR:
cel04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
CELE_C42C1.4 (vps-8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps8
ANAPC4_WD40
RMC1_N
DUF6476
KIP1
Motif
Other DBs
NCBI-GeneID:
178174
NCBI-ProteinID:
NP_001023059
WormBase:
WBGene00016582
Ensembl:
WBGene00016582
UniProt:
A3QMB3
LinkDB
All DBs
Position
IV:complement(<12270490..>12275992)
Genome browser
AA seq
1259 aa
AA seq
DB search
MSTSGSLEKEDWLDLGDLNNAPTFSLEDALNDTENLSDPFLDEQFAVDGEFGSVSNLTES
TAHSPDSHSLTYKLDSAFVIQPHQVISHQILSNEKKTGRVIAVAERNGWIAVVTSKGQLL
LFDLNGNLNQFHRGDETMGGASCVTFSLDGKFLAIGLQKGAIKIMTIDNKLYHMIDEGGQ
PGQGIIQVIYTKDNHTVLTLDNGGSFYECTISKPWLQKRKDKLRCHVSGCNGEVISMKMM
PGDVIALLSVHRLIFYILKPRGQILGIFPIKFEYQFPPACSFWLGTPKTAINSPLNSLYS
TTLKDFRVCISRGNKLAILRIHANNFFTKYRRATVIRQLELPCSLVNIHWMSNHMIVGID
SFGAVWQIDPEKGTAKKQDIEDLQLVFSTPILKGSATGGRVSEAVKAVAEFACYQSVTSA
TSTSERLIVLAHDGLKYLEKVHEWEQLERYKERNDVISASLYLLDVCRDKVRASEMFKRE
SHSLLAEKAHSLLTETVAGVGGGALSDLLAHYRKYIRVLLKVCITGRLLDFLYIACWDRL
SMDSLSKTVFLDHLDEYVLDGALIDPPPPLVNEYLQHLAAEGHFSQFQSAVVRFPIHTLD
LHTVMSICKQNSIYDGIIYVNNKALNDYITPLENMLAEMRTFAHRDMFSDSEQILGNKVL
VYLNCCLSGMAYPFGALDEENRKRVPLETFRCISSLKEKDGSESDEQYPYLRLLLKYDPQ
QFLNVVSTCADVLLFQLDNRLQRFVDTIGQLCVNMKCELSLIHFLNLVVQLSERVLIAPP
IEHVQDSVITLLRMSPWEHSSTENSILTALYHVTPDDKRRIIRAAQNPMRPTILSFLYLN
DRKFEDLIKCYLESNSTEVYSSIGGILKEAELTDDESAEFRKYLMSIMENLFKIDGWLCA
NLINDHFRDVIASMAKSNEEERKMVFPVLAGIAQLRKVSNQPSFCNDDELDEKLFGIVFE
GICKGWPSWMPSSEDPEYADRQLIALFPFWLQLAASTDFCLNIAVGNEHCVRTVIRLLEA
RQHLERAFDLLFEQLEKNKDHDNIMSEWLDETMKFCSRQSSKNETSDRMMRVFQFVSERV
AEFEEDSEKQKKMDESLRTMCRQILSTGTKYAKQLVDKLLESPSFVESTFEDNGGLLLDI
MASCEYEAELYQEMIYLIREENLSLAQKLEMEVSRRAPLMHNPNCITCEQPMHKSGYVFR
CGHFQHIECSTNIDRTCTCDGIPDRLVVPREKPDRPEKRNIFENWDTKLNCRVFPKDSS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatctggctcattagaaaaggaagactggctcgatttgggtgatcttaacaat
gctccaacattttcactggaagatgcactgaatgatacagaaaacctgagtgatccgttt
ttggatgaacaattcgcagttgatggagaattcggatcagtctctaatttgacagaatcg
actgcacactctccagattcacactctctgacatataaactcgattcagcgtttgtaatt
caaccacatcaagtaatatcccatcaaattctctcaaatgaaaagaagactggacgagtg
attgctgttgctgaaagaaatggatggatcgcagtggtcacaagtaaaggacaactgctt
cttttcgatttaaatggaaatcttaatcaatttcatcgtggcgatgagacaatgggagga
gcaagctgtgtgacgttttcgttggatggaaaatttctggcgattggcttgcagaaagga
gctattaaaataatgaccatcgacaataagctctatcatatgattgacgaaggtgggcag
cctggacagggaattatacaagttatctacacaaaagacaatcacactgtgctgactctc
gataatggtggaagtttttacgaatgtacaatcagtaaaccttggcttcaaaaacgaaaa
gataagctaagatgtcacgtgtcgggatgcaatggagaggttatctcgatgaaaatgatg
cctggagatgttattgcacttttatcagttcataggctaattttctatattctgaaacct
cgaggtcaaattcttggcattttccctatcaaattcgaataccaatttccgcctgcctgc
tcattctggctaggaactccgaaaacagctatcaactcaccgctaaactctctttattca
acaactttgaaagacttccgagtttgcataagtcgtggaaacaagttggcaattctcaga
atacacgcgaacaactttttcaccaaatatcgacgtgctaccgtaatccgacaactagaa
ttaccatgctcacttgtaaatattcactggatgagtaatcacatgattgttggaatcgat
tcatttggagccgtttggcaaattgatcctgaaaaggggacagcgaaaaaacaagatatt
gaagatcttcaactagtcttttcaacaccaattcttaaaggatcagcaacaggaggaaga
gtcagtgaagcagtaaaagctgttgcagaattcgcatgttatcaatctgtgacgtcagca
acatctacttcagaacgacttatcgtcttggctcacgatggtctcaaatatttggagaaa
gttcatgaatgggagcaattagaaagatataaagaacgaaacgatgtgatttcagcatcc
ctttatctattggatgtctgtcgtgataaagtacgagccagtgagatgttcaaacgagaa
tcacatagtcttttagctgaaaaagcgcacagtcttctaaccgaaacagtagcaggagtc
ggtggaggtgcattgtcagatctgttggctcattacagaaaatatattcgagttctactg
aaagtctgtatcactggacgactattggattttctttacatagcttgttgggatcgacta
tctatggattctctttcgaaaactgtattcttggatcatctggatgaatatgttctcgat
ggagctctcattgaccctccacctccacttgtcaacgaatatctacaacatcttgctgca
gaaggacatttctcacagtttcagtcagcagttgttcgctttccaattcatacgcttgat
cttcatacagttatgtcaatttgcaagcagaattcaatatatgatggaatcatttatgtg
aataacaaggcacttaatgattatataactccattagagaacatgctggcagaaatgcga
acatttgcacatcgagacatgttttcggatagcgaacaaattctaggaaataaagttctc
gtttatctaaactgttgtctttctggaatggcatatccatttggtgctcttgatgaagag
aatcgaaagagagttccacttgaaacatttcgatgtatcagttctttaaaagagaaagat
ggaagtgaatccgatgaacaatatccatatttgagattgctgctgaaatatgatccacaa
cagtttctaaacgtggtgagcacttgcgcagatgttcttctttttcaattggataatcgg
ctacaacggtttgtggatacgataggacaactatgtgtaaatatgaaatgtgaattatcc
ctcattcactttctcaacctcgtggtacaactctccgagcgagttttgatagctccacca
atcgaacatgtccaagattcagtgataactctactgagaatgtctccttgggaacattca
agcacggaaaattcaattttaactgcactataccatgtgactcctgatgataaaagaaga
ataatccgcgcggctcaaaatccaatgcgtccaacaattcttagttttctttatctaaat
gatagaaaattcgaagatttgatcaaatgctacttggaatcgaatagtaccgaagtgtat
tcctcgattggtggaattctgaaagaagctgaattaactgatgatgagtcagcagagttc
aggaagtatttgatgagcatcatggagaatttgttcaaaatagatggatggctttgcgct
aaccttatcaacgatcatttccgagatgtaatagcatctatggcgaaaagcaacgaagaa
gaacggaaaatggtattcccggttctcgctggaattgcacaattgagaaaagtctcaaat
caaccatctttttgcaatgacgatgaactagatgaaaagctatttggaatcgtttttgaa
ggaatctgtaaaggatggccaagctggatgccatcatctgaagatccagaatatgctgat
cgccaactcattgctctatttcctttttggcttcaacttgccgcgagtactgatttctgt
ttgaatattgctgttggaaatgagcattgcgttcgtacagtaatccggcttcttgaagca
aggcaacatctggaaagagcatttgatttattgtttgaacaattggaaaagaacaaagat
cacgataatatcatgtcagaatggctcgacgagacgatgaagttttgctctcggcagtct
tcaaaaaacgaaactagtgatcgaatgatgcgagtgtttcaatttgtttctgaaagagtc
gcagaatttgaagaagattctgaaaagcagaaaaagatggacgagagtcttcgaacaatg
tgcagacagatattgtcgactggaacaaaatatgcgaaacaactagtggataaattactt
gaaagtccatcttttgttgagtcaaccttcgaagacaatggtggccttcttctcgatata
atggcgtcttgtgaatatgaagccgaattgtatcaagaaatgatatatttaataagagaa
gaaaatctgtcccttgctcagaaactagagatggaagtgagtcgtcgtgcacctttgatg
cacaatccgaactgcatcacatgtgagcagcctatgcacaaaagtggatacgtcttccga
tgcggtcatttccaacacattgaatgctcgacaaacattgatcgtacttgtacttgtgat
ggaatacctgatcgactcgttgtgccacgcgaaaagcctgataggccggagaagcgaaat
atttttgaaaattgggacacgaagctgaactgtcgagtttttcctaaagattcttcctag
DBGET
integrated database retrieval system
