Caenorhabditis elegans (nematode): CELE_C54A12.1
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Entry
CELE_C54A12.1 CDS
T00019
Symbol
ptr-6
Name
(RefSeq) SSD domain-containing protein
Organism
cel
Caenorhabditis elegans (nematode)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
CDC45
DTX3L_a-b
Motif
Other DBs
NCBI-GeneID:
173898
NCBI-ProteinID:
NP_494986
WormBase:
WBGene00004221
Ensembl:
WBGene00004221
UniProt:
Q09938
LinkDB
All DBs
Position
II:complement(5242442..5246837)
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AA seq
982 aa
AA seq
DB search
MRCRIPTLDKKLEKVFAWYTKHLLVDYYYVFLIAPVILTAICSCGFYWIKELTLLDARKL
YTPVSAPSWKEEQVFSELWPVKSYEFLPERTFQWNRYLYLVVHGRPYENGTYPNILEGSY
LNDIAKIEEELVTNVSFPREAALEDNPALMRKRHLNETEIEENRNITITFKDVCMNWYGD
CYREKNVIELLKRRHELNKRGISVTFPQVNQEGTPIYIAFVIGGVDTYPNDTIKYARAMR
LWYFLKFDDEEQEQLAKFWEDTAEKFVRETYADHPTIQCHIKHSRIVDQGLTRNANRLKP
YFNVTIAVLVLFTAFYSVKWYFRMDHSWPLHIDWLRSKPMLALGGVLSSVLAILSGIGLL
LWFGMFFAEITLIAPFLVLSIGVDDMFIAVAAWHNTEMKYPGRSPKVMKKRMIEAMSESA
VAIFITSFTDVLSFGAGTITDIIAVQGFCAMTAACMFFTFLYQITFFAALMVISAKAQMS
GRNSCMPCITAGDIYTIEDGSLQPNLKKKKSKSRKDAKAEKEKKDEAKNDKNMEIEENAE
NAEKSSYDSSPDPSQIHIPVKSRGAMGHFFRDYYVPWLLNWKTKLFMFVTFIIYLGISVY
GICVMEQGLDYDKLLLHSDPLVEALKREIELFHGGDQIEIAIQNCPNITIAESRDRIELV
AQEFENISYSLGGKGTSFWMREYKKYSNLTGSYLNDNRESWIVGVYEWSQLFAFYKLWSQ
DFVWANESDYDTLELKSYRFRIGVHRLSTPTDLVLITEELRGVADRHPDLNIVTYQQSRA
IADQLNVILSSTITNDTLAMFCMFCVALIFIPNPICALFITFAMVTIDIGVIGFLSLWSV
KLDPISMITIIMSIGFSIEFSAHITHGFVSNDSNLSAFDRCVDAMEKLAWPVVHGSLSTI
LGVFVLAFIDSYMVLVFFKTISLVLIIGAWHALMLLPILLSMCIPVIERLSDASKKASDR
RRKLKENKNSVYAINLPVNVSS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgcgatgccggattccaactcttgacaaaaagctggaaaaagttttcgcatggtatact
aaacaccttctagttgattattattatgtctttctaatagctcctgtcatattaactgcc
atatgtagttgtggattttattggattaaagaattgacacttcttgatgcaaggaagctg
tacacacctgtttcagcaccaagttggaaagaagaacaggtttttagtgagctgtggcca
gtgaaatcctacgagtttttacctgaacgtacatttcaatggaatcgatatctttatcta
gttgttcacggacggccatatgagaatggaacttaccccaatattttagaaggttcttat
cttaacgatattgcaaaaattgaagaggaattagtgacaaatgtcagttttccacgggaa
gctgcacttgaagataatccagcactgatgaggaagagacatttgaatgaaactgaaatc
gaagagaacaggaatattacaattacgtttaaggatgtgtgcatgaactggtatggggat
tgttacagagagaaaaatgtcatcgagttgttgaaacggaggcacgaactcaacaaaaga
ggaatctcagtgacattcccacaagttaaccaagaaggaactccaatatatattgcattt
gtgattggaggtgtagatacatatccgaatgatactatcaaatacgcaagagccatgcga
ctttggtatttcttaaaatttgacgacgaagagcaagagcagttggctaaattttgggaa
gacacagctgaaaaattcgttcgtgaaacatacgcagaccatccaacaattcaatgtcat
attaaacattcgagaattgtggatcagggtctgaccaggaatgcaaatcgattgaaacca
tatttcaatgtaacaattgccgtgttagtactgttcaccgcattttattctgtcaaatgg
tacttccgcatggatcattcatggccacttcatattgattggcttcgttcaaaacctatg
cttgcacttggtggagttttgtcttctgttctggctattctgagtggaattggattgctc
ttgtggttcggaatgttttttgcagaaatcacactcatcgctccgttcttggttttatct
atcggtgtcgatgacatgttcattgcggttgccgcgtggcacaacactgaaatgaaatat
ccgggaagaagcccaaaagtgatgaaaaaaagaatgattgaagcaatgtccgagtcagca
gttgcaatcttcatcacatcattcactgacgttctttcttttggagctggaactatcact
gatatcattgctgtccagggtttctgtgcaatgacagctgcctgcatgttcttcacattc
ctttatcaaatcaccttctttgctgctttaatggttatttctgcaaaagctcaaatgtct
ggcagaaactcttgtatgccgtgtattactgccggcgatatctacacaattgaagatggt
tcattgcaacctaatttgaagaagaagaaatcaaaaagcagaaaagatgcaaaagctgaa
aaagaaaagaaagatgaagctaaaaatgataaaaatatggaaattgaagaaaacgccgag
aacgccgaaaagtcttcatatgactcatcgccagatccatcccaaattcatatcccagtc
aagagtagaggtgcgatgggacatttcttcagagattactatgttccctggcttctcaac
tggaaaacgaaactttttatgttcgttacatttattatataccttggaatatctgtttat
ggaatttgtgtaatggaacaaggtctagattatgacaaactgctgctccattctgaccca
ttggttgaagcattgaaacgagaaattgaactattccatggtggagatcaaatcgaaatt
gctattcaaaactgtccaaatattacaattgccgagagccgagatagaattgaacttgtt
gctcaagagtttgaaaatatttcctactctcttggcggcaaaggaacatcattttggatg
agagaatacaaaaagtacagtaacctcactggatcttatttgaacgataatagagaaagt
tggatcgttggagtttatgaatggagccagctctttgcgttttataaactttggtcacaa
gattttgtgtgggcgaacgaatccgattatgatactttggagttgaagtcatatcgattc
cggattggagttcatcgtctttcgacgcctacagatttggttttgattacagaagagctc
cgtggtgtggctgaccgtcatccagatctgaatattgtaacatatcaacagagtcgagca
atcgccgatcagttgaatgtgatcttaagttcaacaatcacaaatgacacgctggcaatg
ttttgtatgttctgtgtagctctcatcttcattccaaatccaatttgtgcacttttcatt
acatttgcgatggttactattgatattggtgtaattggatttttatcattatggagtgtt
aagctggatccgatttcaatgattacaattattatgtccattggattttcaattgaattt
tccgctcatattactcatggatttgttagtaatgatagtaatctgtcggcttttgatcga
tgcgtagatgctatggaaaagttggcttggccagtggtccatggaagtttgtctacaatt
ctcggagtttttgttctagcatttattgattcctacatggttcttgtcttctttaaaact
atctctcttgttcttattattggtgcctggcatgctctaatgcttctcccgatacttctc
tcaatgtgtattccagttatcgaacgactttcagatgcatccaagaaagcatccgatcgt
cggagaaagctgaaggaaaataaaaatagtgtttatgcaattaatttgccggtaaatgta
tcctcgtga
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