KEGG   Caenorhabditis elegans (nematode): CELE_F18H3.3
Entry
CELE_F18H3.3      CDS       T00019                                 
Symbol
pab-2
Name
(RefSeq) Polyadenylate-binding protein
  KO
K13126  polyadenylate-binding protein
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03015  mRNA surveillance pathway
cel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CELE_F18H3.3 (pab-2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CELE_F18H3.3 (pab-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_F18H3.3 (pab-2)
   03041 Spliceosome [BR:cel03041]
    CELE_F18H3.3 (pab-2)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     CELE_F18H3.3 (pab-2)
   mRNA cycle factors
    Stress granule specific factors
     CELE_F18H3.3 (pab-2)
Spliceosome [BR:cel03041]
 Complex C
  Other components
   Complex C specific factors
    CELE_F18H3.3 (pab-2)
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_5 Nup35_RRM_2
Other DBs
NCBI-GeneID: 181473
NCBI-ProteinID: NP_001379081
WormBase: WBGene00003903
Ensembl: WBGene00003903
LinkDB
Position
X:complement(13522262..13525823)
AA seq 692 aa
MAQVPPPMTQVVTSAPPPTAAATVVAGAVAGQPQAVIQQGPPPTNIGYPPNATYSMASLY
IGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNF
EVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD
EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNV
FVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLND
SILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLR
DHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQR
KEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQPQS
AQIRGPPGQRVFQNQMFMQYPFNQRQVYPQQQGRPPMRTNDGRPQYGMAPRPAGAPRVGG
PGVQMGGAPIRQQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQSGIVIHG
QETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQD
AELFRSKVEEAFGVLTNAQSAAASTSAPTAKN
NT seq 2079 nt   +upstreamnt  +downstreamnt
atggcccaagttccaccgccaatgactcaagtggttaccagtgctccaccaccgaccgca
gcagcaaccgtcgtcgccggtgcagttgccggacaaccacaagccgtcattcagcagggt
ccaccgccaacaaacataggatacccgccaaatgcaacctattcgatggcttcactctac
attggtgatcttcatcccgatgtttcagaggctatgctattcgagaagttcagtatggcg
ggaccggtgctttcaatccgagtgtgccgcgacaataccagccgcttgtcgctcgggtat
gcctacgtcaacttccagcagcctgctgatgccgagcgcgccttggacactatgaacttc
gaagtcatccacggacgtccaatgcgtatcatgtggtcccaacgtgaccctgctgctcgc
cgtgccggaaatggaaacatcttcattaagaacttggatcgtgtcattgacaacaagtcc
gtctacgacactttctcgctttttggaaacattttgtcttgcaaagttgccaccgacgat
gaaggaaacagcaaaggatacggatttgttcacttcgagactgagcactctgcgcaaact
gccattgagaaagtcaatggaatgcttctttctgataagaaagtctatgtcggaaaattc
caacctcgcgcacaacgcatgaaggagcttggagagagtggcctcaagtacaccaacgtc
ttcgtcaagaacttcggcgagcatctcgaccaggaaaagctttccgcaatgttctccaag
tttggagagattactagtgccgtagtgatgaccgatgcgcaaggcaaaccaaaaggtttt
ggatttgtcgcttttgctgatcaggatgccgctggtcaagctgttgaaaaactcaacgac
agcattttggaaggaactgactgcaagctttcagtctgcagagctcaaaagaagtctgag
cgttctgcagagctcaagagaaagtacgaagctttgaagcaagagcgtgtccagcgttat
caaggagtaaacttgtacgtcaagaacattgaggaagatctcaacgatgatggtcttcgt
gatcacttttcttccttcggaacaatcacttctgctaaagttatggttgatgagaacgga
agatcgaagggattcggtttcgtgtgctttgagaagccagaagaggcaaccgctgccgtc
actgatatgaactccaaaatgattggagccaagccactgtatgtggcccttgctcaacgc
aaggaggatcgtcgtgctcagttggcatctcagtacatgcaaagacttgcaactcttcgc
atgggacagcaggccagcggagttccagcaatgactcagctctaccagccaggacaacaa
ggatactttgttccaaatccaatgaatgctcaagggcgtccaggattccagccacaatct
gctcaaattcgcggaccaccaggacaacgcgtgttccaaaaccagatgttcatgcaatat
ccattcaatcagcgccaagtttacccacaacaacagggacgtccaccaatgcgaaccaac
gatggtcgtccacaatatggaatggctccaagaccagccggagcaccacgtgtcggagga
cctggagtgcagatgggaggggcacctattcgtcaacaaggaccagccccacgcggagca
ccacagaagccgttctaccaaggaccaccacgccagcaacaaccacaacagcactcccag
caaccagcacaacagccaggacaacaaggacaaggacaatccggaatcgttattcacgga
caggagactcttacctcccatatgcttgctcaagctgctccacaagagcaaaagcaactt
ctcggagagcgtatctatgctcttatcgagaagatgttcccgaaccacaaggaggccggc
aaaatcactggaatgatgctggagattgacaacgccgagttgatcatgatgctccaagac
gctgagttgttcagaagcaaggtcgaggaagcctttggagtgctcaccaatgctcagagt
gctgctgcttctacttctgctccaactgctaaaaactaa

DBGET integrated database retrieval system