Caenorhabditis elegans (nematode): CELE_F18H3.3
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Entry
CELE_F18H3.3 CDS
T00019
Symbol
pab-2
Name
(RefSeq) Polyadenylate-binding protein
KO
K13126
polyadenylate-binding protein
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03015
mRNA surveillance pathway
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CELE_F18H3.3 (pab-2)
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_F18H3.3 (pab-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_F18H3.3 (pab-2)
03041 Spliceosome [BR:
cel03041
]
CELE_F18H3.3 (pab-2)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CELE_F18H3.3 (pab-2)
mRNA cycle factors
Stress granule specific factors
CELE_F18H3.3 (pab-2)
Spliceosome [BR:
cel03041
]
Complex C
Other components
Complex C specific factors
CELE_F18H3.3 (pab-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
181473
NCBI-ProteinID:
NP_001379081
WormBase:
WBGene00003903
Ensembl:
WBGene00003903
LinkDB
All DBs
Position
X:complement(13522262..13525823)
Genome browser
AA seq
692 aa
AA seq
DB search
MAQVPPPMTQVVTSAPPPTAAATVVAGAVAGQPQAVIQQGPPPTNIGYPPNATYSMASLY
IGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNF
EVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD
EGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNV
FVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLND
SILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLR
DHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQR
KEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQPQS
AQIRGPPGQRVFQNQMFMQYPFNQRQVYPQQQGRPPMRTNDGRPQYGMAPRPAGAPRVGG
PGVQMGGAPIRQQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQSGIVIHG
QETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQD
AELFRSKVEEAFGVLTNAQSAAASTSAPTAKN
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcccaagttccaccgccaatgactcaagtggttaccagtgctccaccaccgaccgca
gcagcaaccgtcgtcgccggtgcagttgccggacaaccacaagccgtcattcagcagggt
ccaccgccaacaaacataggatacccgccaaatgcaacctattcgatggcttcactctac
attggtgatcttcatcccgatgtttcagaggctatgctattcgagaagttcagtatggcg
ggaccggtgctttcaatccgagtgtgccgcgacaataccagccgcttgtcgctcgggtat
gcctacgtcaacttccagcagcctgctgatgccgagcgcgccttggacactatgaacttc
gaagtcatccacggacgtccaatgcgtatcatgtggtcccaacgtgaccctgctgctcgc
cgtgccggaaatggaaacatcttcattaagaacttggatcgtgtcattgacaacaagtcc
gtctacgacactttctcgctttttggaaacattttgtcttgcaaagttgccaccgacgat
gaaggaaacagcaaaggatacggatttgttcacttcgagactgagcactctgcgcaaact
gccattgagaaagtcaatggaatgcttctttctgataagaaagtctatgtcggaaaattc
caacctcgcgcacaacgcatgaaggagcttggagagagtggcctcaagtacaccaacgtc
ttcgtcaagaacttcggcgagcatctcgaccaggaaaagctttccgcaatgttctccaag
tttggagagattactagtgccgtagtgatgaccgatgcgcaaggcaaaccaaaaggtttt
ggatttgtcgcttttgctgatcaggatgccgctggtcaagctgttgaaaaactcaacgac
agcattttggaaggaactgactgcaagctttcagtctgcagagctcaaaagaagtctgag
cgttctgcagagctcaagagaaagtacgaagctttgaagcaagagcgtgtccagcgttat
caaggagtaaacttgtacgtcaagaacattgaggaagatctcaacgatgatggtcttcgt
gatcacttttcttccttcggaacaatcacttctgctaaagttatggttgatgagaacgga
agatcgaagggattcggtttcgtgtgctttgagaagccagaagaggcaaccgctgccgtc
actgatatgaactccaaaatgattggagccaagccactgtatgtggcccttgctcaacgc
aaggaggatcgtcgtgctcagttggcatctcagtacatgcaaagacttgcaactcttcgc
atgggacagcaggccagcggagttccagcaatgactcagctctaccagccaggacaacaa
ggatactttgttccaaatccaatgaatgctcaagggcgtccaggattccagccacaatct
gctcaaattcgcggaccaccaggacaacgcgtgttccaaaaccagatgttcatgcaatat
ccattcaatcagcgccaagtttacccacaacaacagggacgtccaccaatgcgaaccaac
gatggtcgtccacaatatggaatggctccaagaccagccggagcaccacgtgtcggagga
cctggagtgcagatgggaggggcacctattcgtcaacaaggaccagccccacgcggagca
ccacagaagccgttctaccaaggaccaccacgccagcaacaaccacaacagcactcccag
caaccagcacaacagccaggacaacaaggacaaggacaatccggaatcgttattcacgga
caggagactcttacctcccatatgcttgctcaagctgctccacaagagcaaaagcaactt
ctcggagagcgtatctatgctcttatcgagaagatgttcccgaaccacaaggaggccggc
aaaatcactggaatgatgctggagattgacaacgccgagttgatcatgatgctccaagac
gctgagttgttcagaagcaaggtcgaggaagcctttggagtgctcaccaatgctcagagt
gctgctgcttctacttctgctccaactgctaaaaactaa
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