Caenorhabditis elegans (nematode): CELE_F57C7.3
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Entry
CELE_F57C7.3 CDS
T00019
Symbol
sdn-1
Name
(RefSeq) putative syndecan
KO
K16336
syndecan 2
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04361
Axon regeneration
cel04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
CELE_F57C7.3 (sdn-1)
09150 Organismal Systems
09158 Development and regeneration
04361 Axon regeneration
CELE_F57C7.3 (sdn-1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cel04090
]
CELE_F57C7.3 (sdn-1)
00535 Proteoglycans [BR:
cel00535
]
CELE_F57C7.3 (sdn-1)
CD molecules [BR:
cel04090
]
Proteins
CELE_F57C7.3 (sdn-1)
Proteoglycans [BR:
cel00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
CELE_F57C7.3 (sdn-1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Pox_Ag35
FAM176
Glycophorin_A
Nop14
Cytomega_TRL10
Motif
Other DBs
NCBI-GeneID:
181259
NCBI-ProteinID:
NP_741894
WormBase:
WBGene00004749
Ensembl:
WBGene00004749
UniProt:
P50605
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All DBs
Position
X:complement(10589770..10593334)
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AA seq
288 aa
AA seq
DB search
MILKLNFCLSTYSVLILLSLSTQAFAANQAKTKVVPSSTISTKSLKNGISEQVEGSANIP
GRLADIEVNGSGYPTDDEDGDDVHGSGKPPSSATTKSDKVTSPSHAVVTAKPTTVPTTTA
SFKPPVQPKPKPAANDKEIKVEEDEDDDEDEDEDDEDDEEDFADENIHNDEDFFTTTTTT
TYRPIVVATTSTPRSAATNPPRQQPPMVTSTISSGPFSPFHETLANGFYAAIAGGVLVAV
ITAILLVLFVVFRIRKKDEGSYALDEPKQARPYASYGYTKASTKEFYA
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgattctgaaactcaatttctgcctgtcgacttactcggtcctcattctcctatcctta
tctacacaagctttcgccgcaaatcaagcaaaaacgaaagtggtcccttcgtcaactatt
tctacgaaaagcttgaaaaatggaatatctgaacaggtcgaaggaagtgcaaacattccc
ggcaggttagcagacatcgaagtcaatggatccggctacccaaccgacgacgaagacggt
gatgatgtccatgggtcaggcaagccgccatcttcagctaccacaaaatcggacaaggtt
acatctccaagccatgctgttgtgactgcaaagccgacaacggtacctactactacagcg
agcttcaagcctcctgttcagcccaagcctaagccagcggcaaacgacaaggagatcaag
gtcgaggaggacgaggacgatgatgaagatgaggatgaagatgatgaggatgatgaagaa
gattttgctgatgagaatattcataatgatgaagatttcttcacaactactactacaaca
acgtatcgacctattgttgtagctaccacctcaacgccaaggtcagcagccacaaatcca
cctcgacagcagccaccaatggtcacatcaaccatctcatctggaccattctcgccattc
catgagacactggcaaatggcttctatgcagctattgccggaggtgttctcgttgcggtg
attacagccattctactcgtgctctttgtagtctttcgaatcaggaaaaaagatgaaggg
tcatacgcattggatgaacccaagcaagcaagaccatatgcctcgtatggttataccaaa
gcatcgacaaaagaattttacgcgtaa
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integrated database retrieval system