Caenorhabditis elegans (nematode): CELE_F57C7.3
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Entry
CELE_F57C7.3 CDS
T00019
Gene name
sdn-1
Definition
(RefSeq) Syndecan
KO
K16336
syndecan 2
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04361
Axon regeneration
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09150 Organismal Systems
09158 Development and regeneration
04361 Axon regeneration
CELE_F57C7.3 (sdn-1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cel04090
]
CELE_F57C7.3 (sdn-1)
00535 Proteoglycans [BR:
cel00535
]
CELE_F57C7.3 (sdn-1)
CD molecules [BR:
cel04090
]
Proteins
CELE_F57C7.3 (sdn-1)
Proteoglycans [BR:
cel00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
CELE_F57C7.3 (sdn-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Pox_Ag35
FAM176
DUF2722
Nop14
Glycophorin_A
RXT2_N
NOA36
PTP_tm
MGC-24
PPP4R2
PI3K_1B_p101
Cytomega_TRL10
Motif
Other DBs
NCBI-GeneID:
181259
NCBI-ProteinID:
NP_741893
WormBase:
WBGene00004749
Ensembl:
WBGene00004749
UniProt:
Q8I4H9
LinkDB
All DBs
Position
X:complement(join(10590355..10590530,10591992..10592110,10592257..10592468,10592523..10592623,10592757..10592859,10593126..10593278))
Genome map
AA seq
287 aa
AA seq
DB search
MILKLNFCLSTYSVLILLSLSTQAFAANQAKTKVVPSSTISTKSLKNGISEVEGSANIPG
RLADIEVNGSGYPTDDEDGDDVHGSGKPPSSATTKSDKVTSPSHAVVTAKPTTVPTTTAS
FKPPVQPKPKPAANDKEIKVEEDEDDDEDEDEDDEDDEEDFADENIHNDEDFFTTTTTTT
YRPIVVATTSTPRSAATNPPRQQPPMVTSTISSGPFSPFHETLANGFYAAIAGGVLVAVI
TAILLVLFVVFRIRKKDEGSYALDEPKQARPYASYGYTKASTKEFYA
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgattctgaaactcaatttctgcctgtcgacttactcggtcctcattctcctatcctta
tctacacaagctttcgccgcaaatcaagcaaaaacgaaagtggtcccttcgtcaactatt
tctacgaaaagcttgaaaaatggaatatctgaagtcgaaggaagtgcaaacattcccggc
aggttagcagacatcgaagtcaatggatccggctacccaaccgacgacgaagacggtgat
gatgtccatgggtcaggcaagccgccatcttcagctaccacaaaatcggacaaggttaca
tctccaagccatgctgttgtgactgcaaagccgacaacggtacctactactacagcgagc
ttcaagcctcctgttcagcccaagcctaagccagcggcaaacgacaaggagatcaaggtc
gaggaggacgaggacgatgatgaagatgaggatgaagatgatgaggatgatgaagaagat
tttgctgatgagaatattcataatgatgaagatttcttcacaactactactacaacaacg
tatcgacctattgttgtagctaccacctcaacgccaaggtcagcagccacaaatccacct
cgacagcagccaccaatggtcacatcaaccatctcatctggaccattctcgccattccat
gagacactggcaaatggcttctatgcagctattgccggaggtgttctcgttgcggtgatt
acagccattctactcgtgctctttgtagtctttcgaatcaggaaaaaagatgaagggtca
tacgcattggatgaacccaagcaagcaagaccatatgcctcgtatggttataccaaagca
tcgacaaaagaattttacgcgtaa
DBGET
integrated database retrieval system
