Caenorhabditis elegans (nematode): CELE_Y106G6H.2
Help
Entry
CELE_Y106G6H.2 CDS
T00019
Symbol
pab-1
Name
(RefSeq) Polyadenylate-binding protein
KO
K13126
polyadenylate-binding protein
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03015
mRNA surveillance pathway
cel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CELE_Y106G6H.2 (pab-1)
09123 Folding, sorting and degradation
03018 RNA degradation
CELE_Y106G6H.2 (pab-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y106G6H.2 (pab-1)
03041 Spliceosome [BR:
cel03041
]
CELE_Y106G6H.2 (pab-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CELE_Y106G6H.2 (pab-1)
mRNA cycle factors
Stress granule specific factors
CELE_Y106G6H.2 (pab-1)
Spliceosome [BR:
cel03041
]
Complex C
Other components
Complex C specific factors
CELE_Y106G6H.2 (pab-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
Nup35_RRM_2
FN3_7
Motif
Other DBs
NCBI-GeneID:
172920
NCBI-ProteinID:
NP_001369814
WormBase:
WBGene00003902
Ensembl:
WBGene00003902
LinkDB
All DBs
Position
I:complement(10432861..10435238)
Genome browser
AA seq
646 aa
AA seq
DB search
MEMNVAAPAAAVAGAAAPQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLS
IRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAG
NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV
NGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNIT
SCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELK
KKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFG
FVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVP
GAAMYNPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRWGMQNQYPVQNQYMMAQGPGVY
QNRMGRPQNQQGGPRGPPQQYNQVAQGGVRMQGPPRTQNPGVQQQNVPRPPQQQQQQRPA
PTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPG
HKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVSAQKQ
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgaacgtcgctgctcccgctgccgccgttgctggcgctgctgctcctcaacca
ggccaaaatcagaccggctcgtcgtacaccatggcttcgctctacgtcggagacctccac
ccggacgtcaacgagtcgatcctgttcgagaagttcagcgctgccggccctgttctttct
attcgtgtctgcagagacaatgccactcgtctctcattgggctatgcctacgtcaacttc
caacaaccagctgatgctgaacgtgccatggacaccatgaacttcgaggctcttcacggc
aaaccaatgagaatcatgtggtctcaaagagatccagctatgcgtcgttcgggagctggc
aatatcttcatcaagaacctcgataaggtcatcgacaacaagtcaatctacgataccttc
tccctgttcggaaacattctctcctgcaaggttgctatcgacgaggacggattcagcaaa
ggctacggtttcgttcacttcgagaccgaggaagctgcccaaaatgctatccaaaaagtc
aatggcatgcttctggccgggaagaaggttttcgttggcaaattccagccacgtgctcaa
cgcaatcgcgagcttggagagactgccaaacagttcaccaatgtctacgtgaagaacttt
ggagatcactacaacaaggaaacccttgagaagctcttcgccaagttcggaaacattacc
agctgcgaagtcatgactgtcgagggaaagtccaagggattcggatttgttgcttttgct
aatccagaagaggccgagactgctgtgcaagctcttcacgattcaaccatcgagggaact
gacttgaaacttcatgtctgccgtgcccaaaagaagtctgagagacacgctgaattgaaa
aagaagcacgagcaacacaaggctgagcgtatgcagaagtatcaaggagtcaatctctac
gtcaaaaacctcgacgagactgtcgatgatgatggcttgaagaagcaattcgagtcttac
ggaaacatcacgagtgctaaggtcatgactgacgaaaatgggagatcaaagggattcggt
tttgtctgcttcgaaaagccggaggaagctacaagtgcagtgactgagatgaactcaaaa
atggtgtgctcaaagccattgtatgtggctattgctcaacgtaaagaagatcgtcgtgca
cagcttgcttctcaatacatgcaacgtcttgcaagcatgagaatgcacggcaacgttcca
ggagcagccatgtacaacccaacacagccaggaccaggatactatgttgctaatccgatg
caacagcagcgcaacttcgccggtggacaacagatggttcgcccaggaggtcgctgggga
atgcaaaatcagtacccagtccaaaatcagtacatgatggctcaaggcccaggtgtctac
caaaaccgcatgggacgtccacagaaccaacaaggaggaccacgcggtccaccacagcag
tacaatcaagtcgctcaaggaggcgtccgcatgcagggaccaccacgcacccaaaatcct
ggagtccaacagcaaaacgttccacgtccaccacagcaacaacagcagcaaagaccagct
ccaaccggaccaaaggctccaccacagccatatcaggcataccagcaaagaccacaagga
atcgttattggaggacaagagccactcacatctgcaatgttggccgctgctgctcctcag
gagcaaaagcaacttcttggtgagcgtatctacgctctcattgagaaactctacccggga
cacaaggacgcaggaaaaatcacaggaatgatgctcgaaatcgacaattccgagttgatc
atgatgcttcaagatagtgaattgttccgctcgaaggtcgacgaagctgcatcggttctc
gtttccgctcagaagcaataa
DBGET
integrated database retrieval system
