Caenorhabditis elegans (nematode): CELE_Y116A8C.13
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Entry
CELE_Y116A8C.13 CDS
T00019
Symbol
rad-54.B
Name
(RefSeq) DNA repair and recombination protein RAD54B
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CELE_Y116A8C.13 (rad-54.B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_Y116A8C.13 (rad-54.B)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
CELE_Y116A8C.13 (rad-54.B)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
DUF2439
Motif
Other DBs
NCBI-GeneID:
190999
NCBI-ProteinID:
NP_001255913
WormBase:
WBGene00013792
Ensembl:
WBGene00013792
UniProt:
Q9U2S8
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All DBs
Position
IV:<16950067..>16962868
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AA seq
833 aa
AA seq
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MSRVVLNVDSYEGNDTPSAEIARFVVLYGKASTRKHKIWEGDGLLVCFTDSCLLKSEDER
DVICRSSALKGLDQLEDGRIINIGSWSVEIQERIATGPPQKPISAQKPEIQSPMPPMTPG
NSENVENRKRGGFSSPFLGIELPKPLSKRSATFVPPLIGSESSSSGGSSSSTIQEKIPPF
ILNEQDILDRKTTSAVTVDTRFARHLRPHQKSGIQFIFDRLRRGSGKNGGGGGAILADDM
GLGKSLQTMAATWALLKGSKTAQQLANSCLIIVPSSLVNNWKAEFDKWWRLMRFPAVIAL
TANDITTYQSTIKLMPYLVISYDLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLL
SLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVEFRKMCSDRPEQLNELIDECML
RRTAADVDLKHLPEKHEYILFCAASPIQKHVHSEICDYMTGDALSLIFFARQLANHPKLL
LDNLREKTEKSKAHKHSPLLLAFDGAHMPRGGVKESGKLTALVDMIKCFRLLQECTVIVS
NYIETLDMIQQLCEYLNFKVLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGL
NLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTG
LGCVIDAIEVGDTIATFTDEDLKDIFTFTGSATECNTHDLCECPCDGCGMLENEMDEEDD
GDDVVENDAEKIDKSGKIDKIDSDDDEEADDEELEADVTDEVVEDSQEPPEATKPAVAAA
GLRTIASLAELSRWRHFSPRHADTWHHFMTNAGLSQVDTDVELTFAFYQESQY
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgagtggttctcaacgtggatagttatgagggaaatgacaccccgagcgccgaa
atcgcccgttttgtcgttctctatggaaaagcttcgactcgaaaacacaaaatttgggaa
ggagacggtcttctcgtgtgtttcacagattcgtgtctcctgaagtcggaagatgagcgt
gacgtcatttgcagatcctcagcgctaaaaggcctggaccagcttgaagacggccgaatc
atcaatatcggatcctggagcgtcgagattcaggagagaattgctactgggcctccccag
aagcccatttcggcccaaaagcccgaaatccagagcccaatgcctccaatgacgcctgga
aactcggaaaacgtggaaaatcgcaagcgcggcggcttttcaagcccgtttttaggcatt
gagctcccaaaacctctctcaaaacgatccgccaccttcgtaccgccgcttattggctcc
gagagctcctcctccggcggctccagctcctccacaattcaggagaaaatccctccattt
atactcaacgaacaggatattctcgatcgaaaaaccacgtcagcagtcactgtggacacg
agattcgcgagacatctccgacctcatcagaaatctggaattcaatttattttcgatcgg
cttaggcgaggctccgggaaaaacggtggtggtggcggagcaattctcgccgacgatatg
ggactcggaaagagtttacagacgatggctgccacgtgggctttgttgaaaggctcaaaa
accgcccaacaactcgccaattcgtgtctaatcatcgttccatcgtctctcgtcaacaat
tggaaggcagaattcgataaatggtggcgtctaatgagatttcccgcagtaattgctctc
accgccaacgatatcaccacttatcaatcgacaatcaagctgatgccctatcttgtgatc
agttatgatttggctcaacgccacgtggaaaaactgaaaattattcgattcgacgtgatg
gtttgcgatgaggggcataaactcaagaatttggatggaaaattgcggaaaactcttctc
tcactggaaattccgcggcgcctaattctaacaggaactccaatgcaaaacgatttcgaa
gaattctactcgcttctggatttcgtgagaccttccgtattcggttcgattgtcgaattt
cgaaaaatgtgctcagatcggccggagcagctcaatgagctcatcgatgagtgcatgttg
agacgaacggctgccgatgttgatttgaaacatcttcctgaaaaacacgaatacatcctc
ttctgcgccgcctcgccaatccaaaaacatgttcattctgaaatctgcgactacatgaca
ggcgatgctctctcgttgatcttctttgcccgccaactcgccaatcatccgaagcttctt
ctcgacaatctccgtgaaaaaaccgaaaaatctaaggctcacaagcattcgccgctgctc
ctcgcgttcgatggagcacacatgccacgtggcggagttaaagaatcgggaaagctgacg
gcgttggtggatatgataaaatgtttccggcttctgcaggaatgtacagttattgtgtcg
aattatatagaaacattggatatgattcaacaactttgtgaatatttaaactttaaagtt
cttcgattggatgggaagacacaggtcccggatcgccagaaactcgtgagaacattcaat
gatcatcgcgacccatcgaacatcttcctgctcagcacaaaagccggcggcgtcgggctc
aatcttatcggagcatctcggcttgtgctcttcgactcggactggaatccggctaacgat
cagcaggctatggcaagaatctggcgggatggacaagttcggccatgccacatttatcga
ttgattaccacgggcacaatcgaggaaaagatgctccaacgacaaatcaaaaagaccggt
ctgggatgtgtgatcgacgcgatcgaggtcggcgacacgattgccacgttcaccgacgag
gatttgaaggatattttcacttttactggctcggcgaccgaatgtaatactcatgatctt
tgcgagtgcccgtgtgatggttgtggaatgcttgagaatgagatggacgaggaagacgat
ggggatgacgtggtggaaaatgatgcggaaaaaatcgataaatctggaaaaatcgataaa
atcgatagcgacgacgatgaggaagccgatgatgaggagctcgaggcggatgtgaccgat
gaagttgtggaggatagtcaggagccccccgaggccacaaaacccgccgtcgccgccgcc
ggcctccgcacgatcgcctcgctggccgaactgtcccgttggcgccacttttcgccacgt
cacgccgacacgtggcatcatttcatgacgaatgccgggttgtcgcaggtggatacggat
gtggagctgacttttgcgttttatcaagaatctcaatattga
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