Caenorhabditis elegans (nematode): CELE_Y55D9A.1
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Entry
CELE_Y55D9A.1 CDS
T00019
Gene name
efa-6
Definition
(RefSeq) Exchange factor for Arf-6
KO
K12494
PH and SEC7 domain-containing protein
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04144
Endocytosis
cel04361
Axon regeneration
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
CELE_Y55D9A.1 (efa-6)
09150 Organismal Systems
09158 Development and regeneration
04361 Axon regeneration
CELE_Y55D9A.1 (efa-6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cel04131
]
CELE_Y55D9A.1 (efa-6)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cel04990
]
CELE_Y55D9A.1 (efa-6)
Membrane trafficking [BR:
cel04131
]
Endocytosis
Arf GTPases and associated proteins
Arf associated proteins
CELE_Y55D9A.1 (efa-6)
Domain-containing proteins not elsewhere classified [BR:
cel04990
]
Pleckstrin homology (PH) domain-containing proteins
Other PH domain-containing proteins
CELE_Y55D9A.1 (efa-6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_9
Sec7
PH
Motif
Other DBs
NCBI-GeneID:
178217
NCBI-ProteinID:
NP_001122818
WormBase:
WBGene00013223
Ensembl:
WBGene00013223
UniProt:
G5EET6
LinkDB
All DBs
Position
IV:complement(join(12606104..12606289,12606959..12607464,12609868..12610400,12610454..12610637,12610756..12610990,12611295..12611416,12613390..12613623,12614050..12614197,12614570..12614719))
Genome map
AA seq
765 aa
AA seq
DB search
MAKVASSGAEEALATIDGAPRRNVKKSEAFVMSGDVLISLNRNVSSTYAKLLGDQLPPGT
TVASSIHPHQLSRATASAGVSFPSMNRNGAAAQKLSRLPVSTSQIERRGSLARKTSEESS
PTAIRMLKTAPIERMESTDVEESEEETVMMTTDEKENQKKPNENDDEVMVVDEEQFIDGP
SRSPVYDDVDDDLNGSLDAKDMSNNSHQQSFRSPENYSEKDTPSKHSVVTIDGSGVSNHY
DQDGMFSHVYYSTQDTTPKHGSPSLRKQIFESRTTPNTAASNSSASASPSLHATSESRGA
TGGVSLRSAESSNLNQTAVPSTSTNSVGGEREAAQIARNLYELKNCTSTQVADRLNEQNE
FSFLILVKYLELFQFSTTRIDAALREFLSRVELRGESSARERLLRVFSARYLECNPAIFD
SLDEVHTLTCALLLLNSDLHGPNMGKKMTARDFITNIAHTGCTFKREMLKTLFQSIKDNA
ISLQNSAKNSTANGSVASTSRRQPQQIYEVDPDSVVEYYSGFLMRKYVRETDGGKTPFGR
RSWRMVYARLRGLVLYFDTDEHPKATSRYASLENAVSLHHALAEPAPDYKKKSFVFRVRI
AHGGEILFQTSNQKELQEWCEKINFVAAAFSSPTLPLPVTSKPETAPMPRLPRIPCLAPI
TKQLSTHEARVAELNEMIEIVSQSVSPNQPQQLITDRWVLLSFEKRRYSTYINVLRRSLE
ARKASSATTMNIMMTPTRRQQQNQKPVVSEDRLSYTDAVNGAAAH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggtggcgtcgtcgggagccgaagaggcactggccaccattgatggagcccct
cgccggaatgtcaaaaagtccgaggcttttgtaatgtccggtgatgtgctcatttctctt
aatcggaacgtttcgagcacttatgcaaagcttctcggcgaccaactgcctccaggtacc
acagttgcatcgagcattcacccacatcagctgtcaagagccaccgcctctgcgggagtt
tcgtttccatcgatgaatcgaaacggagcggcggcccagaaactgtcaagacttccagtt
tcaacaagccaaatcgaaagacgtggtagtttggcacgaaaaacgtcagaagagtcttca
ccaacagctattcgaatgcttaaaacagctccaattgaacgaatggagagcactgatgta
gaggaaagtgaagaagaaactgtaatgatgactactgatgaaaaagagaatcagaagaaa
ccaaatgaaaatgatgatgaagtgatggttgttgatgaagaacaatttattgacggacca
tcccgttcaccagtttatgatgacgtagatgatgacctgaatggatcattggacgcaaag
gatatgtcaaataattcccatcagcaaagtttcaggtcaccggagaattatagtgaaaag
gacactccgtcgaaacattcagtggtaacaatcgatggaagtggtgttagtaaccattac
gatcaagatggaatgttttcacatgtatactacagtactcaggatactacaccaaaacat
ggatccccatctctacggaaacaaatcttcgaatctagaacgactccaaacacggcggcg
agcaatagttcagcatcagccagtccgtcactccatgcaacttctgaaagtcgaggagcc
actggaggagtatcacttcgatccgccgagagcagtaatctcaatcaaacagccgtaccg
agcacttcaacgaattcggttggcggagaacgagaagctgcacaaattgctcgaaatctg
tatgagttgaagaattgcacatcaacacaggtcgccgatcggctcaacgagcaaaacgag
ttctccttcctgatactcgtcaaatacctcgaactcttccaattctcaacaacacgaatt
gatgcagctcttcgggaattcttgagccgagtagagctccgtggtgaatcatcagctcgt
gaacgtttgctccgagtattttctgctcgatacctggaatgtaatcctgcgatttttgat
agtttggatgaagttcacacgttgacatgtgctcttcttcttttaaattcggatcttcat
ggaccaaatatgggaaagaaaatgacggctcgggattttataacgaatatcgctcataca
gggtgtacttttaaacgggaaatgctcaaaactttgtttcaaagtataaaagataatgcg
atttcactacaaaattcggctaaaaactcgacggcaaatggttcagttgcttcaacatca
agacggcagccacaacaaatatatgaagttgatccagattcagttgtcgaatattatagt
ggatttcttatgcgaaaatatgttagagagactgatggtggaaagactccattcggacgt
cgcagttggagaatggtatacgctcgtcttcgtggactcgttctctactttgacacagat
gaacatccaaaagcaacaagtcgatatgcttcattagaaaatgcagtatcactacatcac
gcactggctgaaccagcacctgattataagaagaaatcatttgtattcagagtacgaatt
gctcacggtggagagattctattccagacaagtaatcagaaagagcttcaagaatggtgt
gagaagattaatttcgttgccgccgcattctcatcgccaacacttccattgccagtcact
tcgaaacctgaaactgcaccgatgccacgacttccacggattccgtgtctcgctccgatt
accaagcagctgagtactcatgaagcacgggttgccgaactaaatgaaatgattgaaatt
gtatcacaatccgtatcacctaatcaaccacagcagctgattaccgatcgatgggtgctt
ttgagtttcgagaaacgacgctacagtacctatatcaacgtactccgacggtcattggaa
gcaagaaaagcgtcttcagcaaccacaatgaacattatgatgacaccaacaagacgtcag
caacagaatcaaaagccagttgtctcggaggatcgtctcagctatacggatgctgttaat
ggagctgctgctcattga
DBGET
integrated database retrieval system
