Caenorhabditis elegans (nematode): CELE_Y67H2A.1
Help
Entry
CELE_Y67H2A.1 CDS
T00019
Symbol
cpsf-3
Name
(RefSeq) Cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CELE_Y67H2A.1 (cpsf-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_Y67H2A.1 (cpsf-3)
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y67H2A.1 (cpsf-3)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CELE_Y67H2A.1 (cpsf-3)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CELE_Y67H2A.1 (cpsf-3)
U7-dependent histone pre-mRNA processing factors
CELE_Y67H2A.1 (cpsf-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
CPSF73-100_C
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_2
Lactamase_B_3
DUF4467
Motif
Other DBs
NCBI-GeneID:
178285
NCBI-ProteinID:
NP_502553
WormBase:
WBGene00013460
Ensembl:
WBGene00013460
UniProt:
Q95PY8
LinkDB
All DBs
Position
IV:complement(13273846..13282878)
Genome browser
AA seq
707 aa
AA seq
DB search
MEEEGDNSDSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEI
ENIDLLLITHFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDR
NQLYTEDDLEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGD
FSCLEDRHLCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGGRCLIP
AFAIGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAV
KNPFIFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYCV
EGTLAKHILSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQTSNFVKALKPPHLVLVHG
ELHEMSRLKSGIERQFQDDNIPIEVHNPRNTERLQLQFRGEKTAKVIGKLAQRVPENNET
ISGVLVKNNFSYSIMVPEELGSYTSLRISSLEQRMSVHYSGSLKLLIFNLQQLNDDACLI
QNIKLKEISKKGSVTQAITVFQGKVNVTVYGNDHVVVVRWDSNPVYDMYADSVVAAILHA
QANPVPDKYLPSNSSFPQFNTAIEGMVKHICGDDVSIVMSERGLLAQFEEDGRRLLVEGS
SDGPVMMGGDDPMDDPTTSHLLQNLTEKMRQIVTTNTEVNEIDDMEC
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaaggcgataattcggattctctttgtttcacgccgctcggatcaggccaa
gaagttggtagatcatgccatctactggagtacaagggaaaacgtgtaatgctcgattgt
ggagtccatccaggactccacggagttgatgctctaccattcgtggatttcgttgaaata
gaaaacattgatctacttctcatcactcattttcatttggatcattgtggtgcacttcca
tggttattacagaaaacagcattccagggaaaatgtttcatgacacatgcaactaaagcc
atctatcgaatgcttctcggtgattatgtacgaatttcaaagtatggaggaccggatcgt
aatcagctttatactgaagatgatttggagaaaagtatggcgaaaattgaaacaattgat
tttcgagagcagaaagaagtgaatggaatcagattttggccgtatgtagcaggtcacgta
cttggtgcatgccaatttatgattgaaattgctggagttcgtgttctctacactggagat
ttttcatgtctggaagatagacatttgtgtgcagcagagattcctccaattactccacaa
gttctcattactgaatccacatacgggacacaaactcatgaagatcgtgcagttagagag
aagagatttacacaaatggttcatgatattgtgacacgtggaggtcgttgtctaattcca
gcttttgcaattggtccagctcaagagcttatgcttattcttgatgaatactgggaatca
catcaagaacttcatgatattccggtttattatgcatcatcactcgcgaaaaagtgtatg
tcagtatatcagacattcgtaaacggaatgaattctcgtattcaaaaacaaattgccgta
aaaaatccgttcattttcaaacatgtttcgactctccgtggaatggatcaatttgaagat
gctggaccatgtgttgttctggcaactcccggaatgcttcagagtggatttagtcgagaa
ttattcgaaagttggtgcccagatacgaagaatggatgtattattgctggttattgtgtc
gaaggaactcttgctaagcacattctatccgaacccgaggagatcgtctcattgagtgga
gaaaagttgccaatgagaatgcaagtcggctatgtctcattctcagctcatactgattat
catcaaacatcgaatttcgtaaaagctctaaaacctccacatttagtacttgtacacggt
gaacttcatgagatgagtcgcctcaagtcaggcattgaacgacaatttcaagatgataat
attccaattgaagtacacaatccccgcaatactgaacggctgcaattacagtttcgaggt
gaaaaaacggcaaaagtaattggaaaattggcacaacgagtaccagaaaacaatgagact
atcagcggagttctcgtcaaaaataacttttcctattcgatcatggtacccgaagagctt
ggatcatacacttcacttcgaatttcaagtcttgaacaaagaatgtctgttcattactcg
ggatcattgaaacttttaatttttaatttacaacaactcaatgatgatgcttgtttaata
caaaatattaagcttaaagaaatatccaagaaaggaagtgtcacgcaagctattactgtg
tttcagggaaaagtcaacgtaacagtgtacggaaatgatcatgtggttgttgttcgatgg
gattctaatccagtatatgatatgtatgctgattcagttgtcgctgcaattcttcatgct
caagccaatccggttcctgataaatatcttccctcaaattcgtctttcccacaattcaat
acggctatagaaggaatggttaaacatatctgcggagacgacgtttcgatagtaatgagt
gaacgtggattgcttgcccaattcgaagaggatggtcgacgtctcctggtagaaggatct
tccgatggtccagttatgatgggtggtgatgatccgatggatgatccgacgacatctcat
ttacttcagaatttgactgagaaaatgcgacagattgtgactacaaacacagaagtgaat
gagattgatgatatggaatgttag
DBGET
integrated database retrieval system