Canis lupus familiaris (dog): 477015
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Entry
477015 CDS
T01007
Symbol
PDCD6IP
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03250
Viral life cycle - HIV-1
cfa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
477015 (PDCD6IP)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
477015 (PDCD6IP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfa04131
]
477015 (PDCD6IP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfa04147
]
477015 (PDCD6IP)
Membrane trafficking [BR:
cfa04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
477015 (PDCD6IP)
Exosome [BR:
cfa04147
]
Exosomal proteins
Proteins found in most exosomes
477015 (PDCD6IP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
CCDC93_N
Ly49
AAT
Motif
Other DBs
NCBI-GeneID:
477015
NCBI-ProteinID:
XP_005634263
Ensembl:
ENSCAFG00000004721
VGNC:
44341
UniProt:
A0A8C0SFG1
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Position
23:4154337..4240985
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AA seq
874 aa
AA seq
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MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAALGRPLDK
HEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEK
SCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALNREPTVDIS
PDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKY
FYFQEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRYDEYV
NVKDFSDKISRALTAAKKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVSVPISQKFTDLF
ENMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQ
SILTKSTSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKER
WQRTPSNELYKPLRAEGTTFRAVLDKAVQADAQVKERYQSHRDTIALLCKPEPELNAAIP
SANPAKTMQGSEVVNVLKSLLTNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVIN
EEALSVTELDRIYGGLTTKVQESLKKQEELLKNVQVSHQEFSKMKQSNNEANLREEVLKN
LATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAR
EPSAPSIPTPAYQSSPAGGHAPAPPTPAPRTMPPAKPQPPARPPPPVLPANRTPPATAPA
PVGTGTAPPAPSHAPGSAAPPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYP
PVYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgttcatctcggtacagctgaagaagacttcggaggtggacctggccaagccg
ctggtgaagttcatccagcagacgtacccgagcggcggcgaggagcaggcccagtactgc
cgcgcggcggaggagctcagcaagctgcgccgggccgcgctcggacgcccgctggacaag
cacgagggcgcgctcgagacgctcctgagatattatgatcagatttgttccattgaaccc
aaattcccattctctgaaaatcaaatctgcttgacatttacctggaaggatgcttttgat
aaaggttcactttttggaggatctgtaaaattggctcttgcaagcttaggatatgaaaag
agctgtgtgttgttcaattgtgcagccttagctagccagattgcagcagaacagaacctg
gataatgatgaaggattgaaaatcgctgctaagcattaccagtttgctagtggtgccttt
ttacatattaaggagacagttttatctgccttaaatcgagagccgactgtggacatatct
ccagatactgttgggaccctcagtcttataatgttggcacaggcccaagaagtttttttt
ttaaaagccacaagagataaaatgaaagatgccatcatagcgaaattggctaatcaggct
gcagattactttggtgatgcttttaaacagtgtcagtacaaagatactctccccaagtat
ttttatttccaggaggtgttccctgtcttggctgcaaagcactgtatcatgcaggccaat
gctgagtaccaccagtctatcttggcaaaacagcagaagaaatttggagaagagattgca
agattacagcatgcggcagaattgattaaaacagtggcatctcgctatgatgaatatgtc
aatgtgaaagatttttctgacaaaatcagccgtgctcttactgcagcaaagaaggataat
gacttcatttatcatgatcgagttccagaccttaaagatctagatcctattggcaaagcc
acacttgtgaaatctaccccagtcagtgtacctatcagccagaaattcactgatttgttt
gaaaatatggttcctgtgtcagtacagcagtcattggctgcctataatcagaggaaagct
gacttggttaatagatcaattgctcagatgagagaagccaccactttggcaaatggggtg
ttagcttcccttaatcttccagcagcaattgaagatgtatctggagatactgtacctcag
tctatattgactaagtctacatctgtgattgaacaaggaggcatccagactgttgatcag
ttgatcaaagagctacctgaactactacaaagaaatagagaaatattagatgagtcatta
agattgttggatgaagaagaagcaactgacaatgatttaagagcaaaattcaaggaacgc
tggcaaaggacaccatctaatgaactctataagcctttaagagcagagggaaccaccttc
agagcagttttggataaagctgtgcaagcagatgcgcaagtgaaagaacgttatcagtct
caccgtgacaccattgctcttctttgtaagcccgagcctgagctgaatgctgccatccct
tctgctaacccagcaaagaccatgcagggcagtgaggttgtaaatgtcttaaaatcctta
ttgacaaatctcgatgaagtaaagaaggaaagagaagggctggagaatgacctgaaatca
gtgaattttgacatgacaagcaaatttttgactgctttggctcaagatggtgtcataaat
gaggaagctctttctgtcactgaactggatcgaatctatggaggtcttacaactaaagtc
caagaatctctaaagaaacaggaagaacttcttaaaaatgttcaggtctcacaccaagaa
ttttcaaaaatgaagcaatctaataatgaagctaacttaagagaagaagttttgaagaat
ttagctaccgcatacgacaactttgttgaacttgtagctaatttgaaggagggcacaaag
ttttacaatgagctgactgaaatcttggtcagattccagaacaaatgcagtgatatagtg
tttgcacggaagacagaaagagatgaactcttaaaggacttgcaacaaagcatcgccaga
gaacctagtgctccttcaattcctacacctgcataccagtcttctccagcagggggacat
gcgccagctcctccaacaccagcgccaagaaccatgccgcctgctaagccccaaccccca
gcccggcctccacctcctgtgcttccagcaaatcgaactcctcctgctactgctccggct
ccggtggggacgggcacagccccaccagctccatcacatgctcctggctcagcagctccc
cctccacaggcccagggacccccatatcctacctatccaggatatcccgggtattgccaa
atgcccatgcccatgggctataatccttacgcatacggccagtataatatgccatatccg
ccagtgtatcaccagagccctggacaggctccatacccaggaccccagcagccttcatac
cccttccctcagcccccacagcagtcttactatccacagcagtaa
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