Canis lupus familiaris (dog): 609516
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Entry
609516 CDS
T01007
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X5
KO
K16617
collagen type XIII alpha
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
609516 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cfa00536
]
609516 (COL13A1)
Glycosaminoglycan binding proteins [BR:
cfa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
609516 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
609516
NCBI-ProteinID:
XP_013968337
Ensembl:
ENSCAFG00000013983
VGNC:
39459
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Position
4:20971110..21119964
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AA seq
741 aa
AA seq
DB search
MAAERARKAAAAGARGPGEPGAPATGALAVAPAERCARLPSAGACGLLALALCSLALSLL
AHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREAFPKTSPGCHC
PPGPPGPAGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGF
PGFPGPIGLDGKPGHPGPKGEMGLTGPRGQPGPPGQKGEKGQCGEYPHRLLPLLNSVRLA
PPPVIKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGYPGLPGPMGPPGLPGPPGPKGDPG
IQGYHGRKGERGMPGMPGKQGAKGAPGIAVAGMKGEPGTPGAKGEKGAAGPPGLLGLLGQ
KGEKGDAGNSIGGSRGEPGPPGLPGPPGPKGEAGVDGQAGPPGQQGDKGEPGAAGEQGPA
GPKGTKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGVPGIPGQKGEIGL
PGPPGHDGEKGPRGKPGDMGPPGPQGPPGKSGPAGMKGEDGHTGSPGEKGEKGETGQAGA
PGLDGPTGEKGEPGGQGRPGATGLPGPIGLPGFTGEKGEPGEKGEPGLEVPGPPGPEGPP
GPQGLQGVPGPKGEAGLDGAKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVP
GPAGPKGERGSKGDLGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAP
GLDAPCPLGEDGLPVQGCWNK
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggagcgcgcccgcaaggcggccgcagcgggtgcccgcggcccgggggagccg
ggcgcgcccgcgacgggggcgctggcggtggcgccggcggagcgctgcgcgcggctgccc
agcgcgggggcgtgcgggctgctggcgctggccctgtgctcgctggcgctcagcctgctc
gcccactttcggacggccgagctgcaggcccgggtgctgcgcctggaagcggagcgtggg
gagcagcaaatggagacggctattttgggacgagtcaaccaactgctggacgagaaatgg
aagctccactctcggaggcgcagggaggccttcccgaagacgtctccaggatgtcactgc
ccgccaggacctcctggtcccgctggaagacctggcctcccaggggacaaaggtgccatt
gggatgcctggacgtgtgggagtaaagggccaaccaggcgagaagggggccccaggagat
gccggcatgtccatcatcggcccccgcggcccccctggtcagccgggcactcgaggtttt
cctggatttccgggtcccattgggctagacggcaaaccgggccaccccggacccaaaggg
gagatgggcctgacgggtccccgaggacagccgggacctccaggacaaaaaggagaaaag
gggcagtgtggagagtacccacatcggctgctgcctctcctcaattctgtgcgactggct
ccacccccagtcataaaaagacggaccttccagggtgaacagggccaggccggtatccaa
ggcccaccagggccaccaggcccccctggaccaagcggacctctggggtacccgggactg
ccagggcccatggggccacccggcttacccgggcctcctggaccaaagggagacccagga
atccaaggctaccacggccggaagggagaacgaggcatgccagggatgccgggcaaacaa
ggagcgaagggagctcctggaattgctgtggccgggatgaagggtgagccagggacccca
ggagccaagggcgagaagggggctgcaggcccccccgggctactcggcctcctggggcag
aagggagaaaaaggtgatgctggcaactccattggaggaagcagaggggagccgggcccc
ccagggctcccggggcccccaggcccaaagggagaagctggtgttgatggccaggccggc
cccccaggacagcaaggagacaagggggagcccggagcagctggagaacagggaccagct
ggccccaagggcaccaagggggagccagggaaaggagagatggtggactacaacgggaac
atcaatgaggccctccaggagatacgaacgctggccttgatggggccccctggtcttccc
gggcaaatcggcccacccggagtcccagggatcccaggccagaagggcgagatcggactc
ccaggccctccaggacacgatggggaaaagggacctcgaggcaaaccaggagacatgggc
ccccccggcccccaaggccccccaggaaagtctggaccggcaggaatgaagggagaagac
ggacacacagggagcccaggagagaagggggagaaaggggagacgggacaggcaggcgca
ccgggtctagacggcccaactggggagaaaggagaaccaggtggccaagggagacccgga
gcaacaggattgcccggccctatcgggctcccgggatttacaggagagaaaggagagccc
ggggagaagggtgagccaggactggaggttcctgggcctccagggccagaggggcccccc
ggaccccaggggctccaaggtgttcctggaccaaagggggaagcaggacttgatggagca
aaaggagagaagggtgcccagggagagaaaggagatcgggggccactgggattacccgga
gcttcaggtttggacggcaggcctgggccaccgggtactccaggaccaatcggagttcca
ggcccagcaggaccaaagggcgagaggggcagcaaaggtgaccttgggatgacaggacca
acaggagcagctgggcttcctggtttacacggaccacccggggacaaaggaaaccggggg
gagagggggaagaaaggctctagagggcccaaaggggataagggagaccaaggagcgcct
ggattagatgccccctgcccgttgggtgaagacggcttaccggtccagggctgttggaac
aagtga
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