Kaistella faecalis: LL667_00215
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Entry
LL667_00215 CDS
T08247
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cfae
Kaistella faecalis
Pathway
cfae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LL667_00215 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfae03400
]
LL667_00215 (ligD)
Enzymes [BR:
cfae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LL667_00215 (ligD)
DNA repair and recombination proteins [BR:
cfae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LL667_00215 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UFK97794
LinkDB
All DBs
Position
complement(39412..41952)
Genome browser
AA seq
846 aa
AA seq
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MPLEKYNEKRDFKQTAEPKGKSQSSKGKLKFVIQRHAASRLHYDFRLEMDGVLKSWAVPK
GPSLNPEDKRLAMMVEDHPFAYRSFEGSIPEGNYGAGEVEIWDEGTYEPLEKAKGKTDDL
LMQAELHKGSLKFILHGKKLKGEFALVKIKNSDSGEPWLLIKHKDKFATDHYDAEENTAE
DSAVTAYLNSKKKVKKVEKKSEEVKTYRNYTPSLSGEKKLTKFITPMLAGTTDKPFSSPD
WAFEIKWDGYRAVADLRKDIQLYSRNGLSYVEKFKKVSNSLKFQEHEMILDGELVAYDDQ
GKPNFQWLQRIGDNPNLNVIYQVFDLLWLNGHSTENLSLIQRKELLKDALVETEYIKYHD
HVLENGEKFFRLVEKMELEGMIAKKIDSTYHRGTRNGDWLKIKSQKTEEVLICGFTAPKG
SRKKFGSLVLGRYDGDELIFCGHTGTGFSDKGLVELYGKMEPLITDKPPFTTTPKTNDKP
TWLKPELIAEIKFTELTGDHIFRHPVFLRLREDLNPKDLNVRKDEEKYVADPVPLKKSVM
KRENEQLQKFGKQEVKLTNQNKIYFPKDQVTKGDVIAYYQSVAKYILPHLKDRPQSMNRF
PNGIDGMSFYQKDASDEIPDWIETQKVFSESTDKYINYILCNDKATMAYLNNLGCIELNV
WTSRKETTDKPDYLVLDLDPSDNNTFEDVILTAQTVKKVMDKAKIKGYCKTSGSSGIHIY
IPAGAQYSFEQVKNFAHIMMQMVQKELPDLTTLERTLQKRDKGKIYLDYLQNRRGQTLAS
VYSLRPKNGAPVSMPIEWDELKIGLKPTDFNIENALARIEEKGDLFKPVLGKGFDMLKAI
SLLETE
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccattagagaaatacaacgaaaaaagggattttaaacagacggcagaacccaaagga
aaatcccagagtagtaaaggaaaactgaaattcgtgattcagcgccatgccgccagcagg
ctgcattatgatttccggctggaaatggatggtgtactgaaaagctgggctgtcccgaaa
ggaccttccttaaatccggaggacaaacgccttgcgatgatggttgaagaccaccctttt
gcttaccgcagttttgaaggaagtatcccggaagggaattacggtgccggcgaagtggaa
atctgggacgaaggaacttacgaacctctggaaaaagctaaaggtaaaaccgatgatctg
cttatgcaggcagaattgcataaaggttctctgaaattcatccttcacggtaaaaagctt
aaaggcgaatttgccctcgtaaaaattaaaaattctgacagcggagagccctggcttctc
atcaaacacaaggataaatttgccacagaccattacgatgctgaagaaaataccgcagaa
gattccgccgttacagcatatctaaattcaaaaaaaaaagtaaaaaaagttgagaaaaag
tcggaggaggtaaaaacataccggaattatactccttcactcagcggcgagaaaaaactc
accaagttcattactcccatgcttgcgggaactactgataaacctttcagttccccggac
tgggcgttcgaaattaaatgggacggctaccgtgccgtggccgatctccggaaagatatt
cagctgtattccagaaatggactttcgtatgttgaaaagtttaagaaagtgagtaactcg
ctgaaatttcaggaacacgaaatgattctggacggcgaactggttgcgtatgatgatcag
ggaaagccgaatttccagtggctgcagcggattggcgataatcccaacctaaacgtgatt
tatcaggtttttgatctcttgtggctgaacggtcattccacagaaaatctaagtctcatc
caaaggaaagaacttctgaaagacgctttggtagaaaccgaatacatcaaataccatgat
catgtcctggaaaatggagaaaaatttttccggctggtagagaagatggaactggaaggc
atgatcgccaagaaaatagacagcacttaccaccgcggtacccgaaatggtgattggctg
aaaataaaaagccagaagaccgaagaagtccttatttgtggatttaccgctcctaaaggc
agtcgcaagaaatttggatcactagttctcggacgttatgatggggatgaactgattttt
tgcggacatacaggtaccggcttcagcgacaaaggtcttgtagaactctacggaaaaatg
gaaccgctgattaccgataagccacctttcacgacgacaccaaagaccaacgataaaccg
acctggcttaaacctgaacttattgctgaaattaaattcacggaacttacgggcgaccat
atcttcagacatcctgtttttctgaggctcagagaagatcttaatcccaaagatcttaat
gtcaggaaagatgaagaaaaatatgtcgctgatccagtaccattaaaaaaatcagttatg
aaaagagaaaatgagcagctgcagaaatttggaaagcaggaagtgaaactgaccaaccag
aataaaatttatttcccgaaagatcaggttaccaaaggcgacgtgattgcttattaccaa
agcgttgcaaaatatattctgccccacctgaaagacaggcctcagtcgatgaaccgattt
cctaatggaatagatgggatgagcttctatcagaaagacgcctccgacgaaatcccggac
tggattgaaacccagaaagtattttcggagtccaccgataaatacatcaattacatcctc
tgcaacgataaggcaacgatggcttatcttaataatttgggctgcatcgagcttaatgtc
tggacaagccggaaagaaaccaccgataaaccggattatctggtgctggatcttgatcct
tcggacaacaatacatttgaagacgtaattcttaccgcgcaaaccgtgaaaaaggtaatg
gataaagccaaaataaaaggatactgcaaaacatcgggcagttcaggaatccacatttat
atcccggcgggcgcacagtattcttttgaacaggttaaaaattttgcccatatcatgatg
cagatggtgcagaaagaacttccggatctcacaacactcgaacgcaccttacagaagcgg
gacaaaggaaaaatttatcttgattacctccagaaccgccgcggacaaacccttgccagc
gtatacagcctccgtccgaaaaacggcgcaccggtttccatgcccattgaatgggacgaa
ctgaaaatcggcctcaaacctactgatttcaacattgaaaacgcattggcaagaattgag
gaaaaaggcgatctcttcaaaccggtactgggcaaaggttttgatatgctgaaggcaatt
tcacttttagaaacggaataa
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