Caulobacter flavus: C1707_22655
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Entry
C1707_22655 CDS
T05702
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cfh
Caulobacter flavus
Pathway
cfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1707_22655 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfh03019
]
C1707_22655 (rnr)
03016 Transfer RNA biogenesis [BR:
cfh03016
]
C1707_22655 (rnr)
Enzymes [BR:
cfh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C1707_22655 (rnr)
Messenger RNA biogenesis [BR:
cfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1707_22655 (rnr)
Transfer RNA biogenesis [BR:
cfh03016
]
Prokaryotic type
tRNA degradation factors
C1707_22655 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
DUF6606
FeoC
Motif
Other DBs
NCBI-ProteinID:
AYV48833
UniProt:
A0A2N5CLN7
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All DBs
Position
4987173..4989515
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AA seq
780 aa
AA seq
DB search
MAKPRLPKTAAPKTARPKMPSKARPPAGLPDKETLLAFLRDAGEAAKADIARHFGLKGAD
RRALREMIREMEAQGQLGKRGRRGFAEAGALPPVGVADVIERDGDGDLFVKLTKADEDVA
LVRLAPDRREAAAGAPGLGDRLLVRFEKLESGEYEARLIKRLGQSAHKVLGVVRKQRREI
RVEPVDRKSKESFVLDVSQPGVGDLKDGDLVVVQQSGHAGRYGPKPCRVLETVGNEEDPR
AASLIAIHSHGIPTGFSDEAEAEAKAAREPTLEGREDLRDLPFVTIDPVDARDHDDAVYA
HPDDSEGNKGGWVVWVAIADVAAYVRPGSALDRDARDKGNSVYFPDRVEPMLPETLSNGL
CSLREGENRATLAVRMVFDKSGHKKSHRFVRGLMRSAAKLSYEQAQAAIDGTPPPAGQDP
DKAPPLLDAILNPLWEAFRLMGKGREQRSPLAIESDERRIVITKDGEIASITRRASLEAH
KLIEEMMIQANVSAAESLEAKRSPLIYRVHDTPSLEKVQNLAEFLQTLEIRWNKGEAPQT
KRFNQLLEETRESPHAAIINEVVLRTQMQAHYSSDNIGHFGLNLAKYAHFTSPIRRYADL
IVHRGLIRALGLGDDGLTDQDIARIKDTAEVITHAERRAMAAERDATDRYIASFLADRVG
ATFSGRITGVTRFGLFIKLDETGADGLVPISNLGEEFFVHDEKLHSLVGERTGKRWPLGL
SVEVRLREATPVTGGLLFEMLTDPLPADPKLPRPRLGARRQAAVKPRGGLPKGVRRGKRR
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacctcgcctccccaagaccgccgccccgaagaccgcgcgcccgaagatgcct
tcgaaggcgcgtccgcccgccggcctgcctgacaaggagacgctgctggcgttcctgcgc
gacgccggcgaggccgccaaggccgacatcgcccgccacttcggcctgaagggcgccgac
cgccgcgccttgcgcgagatgatccgcgagatggaagcccaggggcagctgggcaagcgc
ggccgccgcggcttcgccgaggccggcgccctgccgcccgtgggcgtggccgacgtgatc
gagcgcgacggcgacggtgatctcttcgtcaagctgaccaaggccgatgaggacgtggcc
ctggtgcgcctggcccccgaccgccgcgaggccgccgccggcgcgccgggcctgggcgac
cgcctgctggtgcgcttcgagaagctggagagcggcgagtacgaggcccgcctgatcaag
cgcctgggccagagcgcccacaaggtgctgggcgtggtgcgcaagcagcgccgcgagatc
cgcgtcgagccggtcgaccgcaagtcgaaggagagcttcgtcctcgacgtgtcgcagccg
ggcgtcggcgacctgaaggacggcgacctggtggtcgtgcagcagagcggccacgccggc
cgctacggccccaagccctgccgcgtgctcgagaccgtcggcaacgaggaggacccccgc
gccgcctcgctgatcgccatccacagccacggcatcccgaccggcttctcggacgaggcc
gaagcggaggcgaaagccgccagggagccgacgctggagggccgcgaggacctgcgcgac
ctgccgttcgtgaccatcgacccggtggacgcccgcgaccacgacgacgccgtctacgcc
catcccgacgacagcgagggcaacaagggcggctgggtggtctgggtggccatcgccgac
gtggcggcctacgtccgcccgggctcggccctggaccgcgacgcccgcgacaagggcaac
agcgtctacttccccgaccgggtggagccgatgctgcccgagaccctgtccaacggcctg
tgctccttacgtgaaggcgagaaccgcgccacgctggcggtgcggatggtgttcgacaag
tcgggccacaagaagagccaccgcttcgtgcgcggcctgatgcgcagcgccgccaagctg
tcgtacgagcaggcccaggcggccatcgacggcacgcccccgccggccggccaggatccc
gacaaggccccgcccctgctggacgcgatcctcaatccgctgtgggaggccttccgcctg
atgggcaagggccgcgagcagcgctcgccgctggccatcgaaagcgacgagcgccgcatc
gtcatcaccaaggacggcgagatcgcctcgatcacccgccgcgccagcctcgaggcccac
aagctgatcgaggagatgatgatccaggccaacgtctcggccgccgagagcctggaggcc
aagcgctcgccgctgatctaccgcgtgcacgacacgcccagcctggagaaggtgcagaac
ctggccgaattcctgcagacgctggagatccgctggaacaagggcgaggccccgcagacc
aagcgcttcaaccagctgctggaagagacccgcgagagcccgcacgcggcgatcatcaac
gaggtggtcctgcgcacccagatgcaggcccactattccagcgacaacatcggccacttc
ggcctgaacctggccaagtacgcccacttcaccagcccgatccggcgctatgccgacctg
atcgtgcaccggggcctgatccgggccctgggcctgggcgacgacgggctgaccgaccag
gacatcgcacggatcaaggacacggccgaggtcatcacccacgccgagcgccgggccatg
gccgccgagcgcgacgccaccgatcgctacatcgcctcgttcctggccgaccgcgtgggc
gcgaccttcagcggccgcatcaccggcgtcacccgctttggcctgttcatcaagctggac
gagaccggcgccgacggcctggtgccgatctcgaacctgggcgaggagttcttcgtccac
gacgaaaagctgcactcgctggtcggcgagcgcacgggcaagcgctggccgctgggcctg
tcggtcgaggtgcggctgcgcgaggccacgccggtgaccggcggcctgctgttcgagatg
ctgaccgacccgctgccggcggatcccaaactgccgcgcccgcgcctgggcgcgcggcgg
caggcggcggtcaagccgcgcggcggcctgcccaagggcgtgcggcgaggcaagcggcgc
taa
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