KEGG   Chitinophaga filiformis: MYF79_04960
Entry
MYF79_04960       CDS       T08225                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cfil  Chitinophaga filiformis
Pathway
cfil03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cfil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MYF79_04960 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfil03400]
    MYF79_04960 (ligD)
Enzymes [BR:cfil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MYF79_04960 (ligD)
DNA repair and recombination proteins [BR:cfil03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MYF79_04960 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme Myotub-related
Other DBs
NCBI-ProteinID: UPK70647
LinkDB
Position
1186839..1189379
AA seq 846 aa
MSLRTYDEKRNFNVTSEPKGAKKKSAGKQHIFVIQRHHASRLHYDFRLEVDGVLKSWAVP
KGPSMNPSDKRLAMQVEDHPYDYKDFEGVIPEGNYGAGFVYVWDKGNYELLHEDGKDFDK
EANKEIREGNLKIRLKGKKVKGEFALVKMKNSDDNAWLLLKHKDDYAVKEAYDSENYTPQ
RIKDRGLKEKEKMKSTKKKVSPAKVKAAPTKKEQFTPMMATLVDKPFSREGWLFETKWDG
YRAIADVRKGKVELYSRNHLSFNKDYSKIVSALEDLSHDVVLDGEVVILKKDGTSDFQSL
QNYKNDASGNLVYVVFDMLQLDGQDLKALPLIQRKELLKDVVKQLGSKTVIYSEHVLDDS
EKLYKTAQQKGWEGIIAKEAESLYAEGRRSLSWLKIKIVDEQEAIICGYTDPQGSRKKIG
SLVLGVYDDNNELKYVGNCGGGLNGALINELYDKMQPYRQKTSPFREKVKTNTPVTWIKP
ELVCQVKFSSWTSDRHLRQPIFLGLRKDKPATEVHKETAKSTRMATKKAAAQAAPPPART
HEKERVVTLNSKKVTLTNQQKIFWPDEKITKGTLLDYYIEMADYVLPFLKDRPLSLHRFP
NGINDPGFYQKDIDTAAAPDWLKTVQLHAASASRDVDYLVCNNAATLAYMVNLGCIEINP
WLSRIKNLDNPDYLVLDLDPENIAFKHVVETAQAIKALLDQLGLTAFCKTSGASGLHVYV
PTGAKYNYDTCRLFAEYVAKQVQQELPDITSVIRNKSKRNKKVYIDYMQNSRGQTIASPY
SVRPKPGATVSAPLKWDELTDDLAIADFHIGNMADRIRDVGDLWKDIDKTKNDLRKVIQQ
IEAAAQ
NT seq 2541 nt   +upstreamnt  +downstreamnt
atgagcctgagaacctacgatgagaaacgcaatttcaatgtcacttccgagcctaaaggc
gcgaagaaaaagagtgcgggcaaacagcacatcttcgtcatccagcggcaccatgcttcc
cgcctgcactacgattttcgcctggaagtagatggcgtgctgaaaagctgggcagtacct
aaaggcccctccatgaacccgtccgataaaagactggccatgcaggtggaagaccaccca
tacgattataaagactttgaaggcgtcatccccgagggaaattacggcgcaggcttcgtc
tatgtatgggataaagggaattacgaactgctgcatgaagatggaaaagatttcgataaa
gaagctaataaagagatcagggaaggcaatctgaaaatacgcctgaagggaaagaaagtg
aagggagaatttgccctcgtcaaaatgaagaactcagacgataatgcctggttgttgctg
aaacataaagacgactacgctgtaaaggaagcgtacgacagtgagaactatacgccgcag
cgtattaaggacagaggcctgaaggaaaaagaaaagatgaagtccactaaaaaaaaagta
tcaccggcaaaagtaaaggcagcgcccactaagaaagagcagtttacgcccatgatggcc
acattggtggataaacccttcagccgggaaggctggctgtttgaaaccaagtgggatggt
taccgggctattgctgacgtgcgtaaagggaaagtggaactgtattcaaggaatcatttg
tcttttaataaagactattccaaaatagtaagtgcgctggaagacctgtcgcacgatgtt
gtactggatggtgaagtggtgatcctgaagaaagacggtacttccgacttccagtcatta
cagaactataagaacgacgcttccggcaacctggtgtacgtggtttttgacatgctgcag
ctggatgggcaggacctgaaggccttgccgcttattcagcgtaaagagctgttgaaggat
gtggttaaacagctcggcagcaaaacggtgatctactcagagcatgtgctggacgatagt
gaaaaattgtacaaaacggcacaacagaaaggctgggaaggtatcattgccaaagaggct
gaaagcctctatgccgaaggccgcaggtctttgtcatggctgaagattaagatcgtggat
gaacaggaagctatcatctgtggatatacagatccgcagggtagcagaaagaaaatagga
tcactggtgctcggcgtttatgatgataacaacgaactgaaatatgtcggtaattgtggt
ggcggactaaatggtgcactgatcaatgagctgtatgataagatgcagccttaccggcaa
aagacttccccgttcagggaaaaggtaaagacgaacacgcctgttacctggataaaaccg
gaactggtatgccaggtgaaattctcgtcctggacgagcgacaggcacctgcgtcagcca
atattcctgggactaagaaaggataaaccggcaacagaggtgcataaggaaactgcaaaa
tctaccaggatggccacgaagaaagccgcagcgcaggctgctccccctcccgcacgtaca
catgaaaaggaacgtgtagtaacgctgaatagcaaaaaggttacattgaccaaccagcag
aaaatattctggccggatgaaaagattacgaaaggtacgctgctggactattatattgag
atggccgattatgtactgcctttcctgaaagaccggccattaagcctgcatcgtttcccc
aatggtattaatgatcccggcttctatcaaaaggatattgatacggcagcggctcccgac
tggctgaagacggtacagttgcatgcggcatctgcctcacgggacgtggattacctggta
tgcaacaatgctgctacactggcgtatatggtcaacctgggatgtatagagatcaatccc
tggttgtcgcggataaaaaatctcgacaacccggattacctggtattagacctcgatcct
gaaaatatcgcttttaaacatgtggtggaaacggcacaggctattaaggccctgctggat
caattggggctgactgcattttgtaaaacatcaggcgcctcaggcctgcatgtttatgtg
ccgacaggggctaaatacaattatgacacctgccgcctgtttgccgaatatgtagcaaag
caggtacagcaggagttgccagacatcacgagcgtgatccgcaataaatcgaaacggaat
aaaaaagtgtatatagactatatgcagaacagccgcgggcagaccatcgcctctccatat
tccgtacgtccgaagccgggagctaccgtttccgcaccgttgaaatgggatgagctgacc
gatgatcttgccattgctgattttcatatcgggaacatggcagacaggatcagggacgtg
ggcgacttatggaaagacatagacaaaacaaagaatgatctgcgtaaagtgatccagcag
attgaggctgccgcacaatga

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