Campylobacter fetus subsp. fetus 04/554: CFF04554_1802
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Entry
CFF04554_1802 CDS
T03330
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cft
Campylobacter fetus subsp. fetus 04/554
Pathway
cft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFF04554_1802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cft03019
]
CFF04554_1802
Messenger RNA biogenesis [BR:
cft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFF04554_1802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
Y_phosphatase
MupG_C
DUF2235
Motif
Other DBs
NCBI-ProteinID:
AIR79639
LinkDB
All DBs
Position
complement(1786625..1788586)
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AA seq
653 aa
AA seq
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MNEENKTPVAERTNRKHRYKHHRDNLKKQANANTQNVQANEVATDIAESEVKKPKKRKHK
NGNNTVKISGNEGWQKDMQASIEANRASHELRLNPLKYLNSSEHKIKITPLGGLGEIGGN
MTVFETDNDAIIVDIGMSFPSESMHGVDILIPDFDYIRKIKQKVRGIIITHAHEDHIGAV
PYFFKEFQFPIYATPLPLGMISNKFEEHGLKAHRSYFRPIEKRKLYEIGDFEIELIHITH
SIIDASALVITTKAGTILHTGDFKIDHTPIDGYPTDLNRLAYYGERGVLCMLSDSTNSYK
EGITKSESSVGKTFDAIFATSKGRVIMSTFSSNIHRVYQAIERGVKHGRKVCVIGRSMER
NLWTAIELGYVNLDKKIFIDANEVSKYPDNEVLIVTTGSQGETMSALYRMATDEHKYIKI
KPTDQIIISSKAIPGNETSVSTVLNYLLKSGASVAHQDFSEIHVSGHAAQEEQKLMLRLV
KPKFFLPVHGEYNHIVRHKETAIACGVDERNTYLMSDGDQIEVCQKYIKRLKTVKTGKVF
IDNQINKQISDDVVIDRQKLAEAGVVTIISQIDKNAKTLIQNRVISYGLVSERQSKNLSK
ELEEVLLQFLSNVKDELLHDQRALENQIRQVIRKHIFRKIKKYPTIVPVVYLM
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagaaaacaaaacccctgtggctgaaagaacaaatagaaaacacagatacaaa
caccacagagacaatctaaaaaaacaagcaaatgctaatacgcaaaacgtacaagcaaat
gaagtcgcaacagatatagcagaatcagaggtaaaaaaacctaaaaaacgcaaacataaa
aacggtaataataccgtaaaaattagcggaaacgaaggctggcaaaaagatatgcaagct
tctatagaagcaaatagagcctctcacgaattaagacttaatccattaaaatatctaaac
tcaagcgaacataagatcaaaataactccgcttggcggacttggcgagatcggtgggaat
atgaccgtatttgagactgacaatgatgctattatcgtggatatcggtatgagctttccg
agcgagagtatgcatggtgtggatattttgatacctgattttgattatatacgtaagata
aaacaaaaagttcgcggcataatcatcactcacgcacatgaggatcatataggagccgtt
ccgtatttttttaaggaattccagtttcctatttatgcaactccgcttccattaggaatg
ataagcaataaatttgaagaacacggtctgaaggctcacagaagctattttcgtcccata
gaaaaaagaaaactttatgagataggtgactttgagatagagcttattcatataactcac
tctattatagatgcgagcgcgttagttatcactacaaaagcaggaacaattcttcatacc
ggagattttaagatagatcatactccaattgatggctatccgacagatttaaatagactt
gcatattatggagaaagaggcgttttgtgtatgttaagcgactctacaaatagctacaaa
gagggtattacaaagagtgaaagtagcgtaggaaagacttttgatgctatatttgcaaca
tcaaaaggcagggttatcatgagtacgtttagctcaaatatccaccgtgtttatcaagcc
attgagcgtggcgtaaagcatggtagaaaagtttgtgttataggtagaagtatggagaga
aatctttggactgctatcgagctaggatatgtaaatttagataaaaagatatttatcgat
gcaaacgaagtcagcaaatatccagataacgaagttcttatagtaaccacaggaagtcag
ggcgagactatgagcgcgctatatagaatggcgactgatgaacataaatatatcaaaatc
aaaccaacagatcagataatcatcagctcaaaagcgattcccggaaatgaaacaagtgtt
tcaacagtgcttaattatcttttaaaaagcggtgcaagcgtagctcatcaagactttagc
gaaattcatgtaagtggacacgccgcccaagaagagcaaaagcttatgctaagacttgta
aaacctaaatttttcttaccggttcatggcgagtataatcatatagtaagacacaaagag
actgctatagcatgtggtgttgatgagagaaatacttatcttatgagcgatggtgatcag
atagaagtttgtcaaaaatatataaaaagattaaaaactgtaaaaacaggtaaggttttc
atagacaatcaaatcaataagcaaatttctgatgatgttgttatagatagacaaaaattg
gctgaggctggagtggtaactataatatctcagattgataaaaatgctaaaactttaatt
caaaatcgtgttataagctatggtttggttagcgaaagacagagtaaaaaccttagcaaa
gagttggaagaggttcttttgcagtttttaagcaatgttaaagatgaattgcttcacgat
caaagagcgttagaaaatcaaattaggcaagttattagaaaacatatatttagaaagatt
aaaaagtaccctaccattgttccggttgtgtatttgatgtga
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