Cellulomonas gilvus: Celgi_1689
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Entry
Celgi_1689 CDS
T01537
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cga
Cellulomonas gilvus
Pathway
cga03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Celgi_1689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cga03400
]
Celgi_1689
Enzymes [BR:
cga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Celgi_1689
DNA repair and recombination proteins [BR:
cga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Celgi_1689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AEI12200
UniProt:
F8A5P5
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All DBs
Position
complement(1835633..1836529)
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AA seq
298 aa
AA seq
DB search
MSPDRQVLDVGGVPVRVSHLDKVLYPATGTTKAELIDYVVRVSPVLLAQLHERPVTRIRF
PSGVDGTPFFEKNVPKGAPDWLRHRELPAAPGNDEGDEGTTLDLPFLDDLPGLVWATNAG
ALELHTPQWTVSRRGAVRGADRLVVDLDPGVGAGLDECVAVAHLVRDRLAQDGLTRTVPV
TSGSKGMQLYAPLPRRRPAAQVRLYARDLAQQLAAAHPGLVVAVIRKDVRAGKVLLDWSQ
NHPAKTTITPYSLRGRAEPRVAAPRWWEEIEPGLRQLTPDEVVQRLDTRGDPFDDQAG
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgagccccgaccgtcaggtgctcgacgtcggcggcgtgcccgtgcgcgtgtcgcacctg
gacaaggtgctgtacccggccacgggcaccaccaaggccgagctgatcgactacgtggtg
cgcgtcagccccgtgctgctcgcgcagctgcacgagcgtcccgtgacccgcatccggttc
ccgagcggggtggacggcacgcccttcttcgagaagaacgtccccaagggtgcgccggac
tggctgcggcaccgcgagctgcctgccgcgccgggcaacgacgagggtgacgagggcacc
acgctggacctgccgttcctcgacgacctcccgggcctggtgtgggcgacgaacgcgggc
gcgctcgagctccacacgccgcagtggacggtctcgcggcgcggtgcggtgcgcggtgct
gaccgcctggtggtcgacctggaccccggcgtgggcgcaggcctcgacgagtgcgtggcc
gtcgcgcacctggtgcgcgaccggctcgcccaggacgggctgacgcggacggtcccggtc
acgtccgggagcaaggggatgcagctgtacgcgccgctgccccggcggcgcccggcggcg
caggtccggctgtacgcgcgcgacctcgcgcagcagctcgccgccgcgcaccccggtctc
gtcgtcgcggtcatccgcaaggacgtgcgtgcgggcaaggtcctgctggactggtcgcag
aaccacccggccaagacgacgatcacgccgtactcgctgcggggccgcgccgaaccgcgc
gtcgcggcgccccggtggtgggaggagatcgagcccgggctgcgccagctgacgcccgac
gaggtggtgcagcggttggacacgcgcggtgaccccttcgacgaccaggcaggatga
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