Carassius gibelio (silver crucian carp): 127970080
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Entry
127970080 CDS
T08819
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
cgib
Carassius gibelio (silver crucian carp)
Brite
KEGG Orthology (KO) [BR:
cgib00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgib00536
]
127970080
Glycosaminoglycan binding proteins [BR:
cgib00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127970080
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127970080
NCBI-ProteinID:
XP_052428277
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Position
B13:21567071..21620736
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AA seq
644 aa
AA seq
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MAWQCVVFFLISIVDWFFLYSVPTFLSPLFQGPPGRAGFPGDKGSMGIPGRMGLKGNLGE
KGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGPKGDMGPRGPKGVPGEP
GPKGEKGVCGDYTHRQMLPITVRNMPSISPLILKRLKQGEPGAQGPPGPPGPPGPPGTPG
LTGASGPPGKPGEPGKPGKDPRMLPGLKGEPGVPGQKGDRGEAGPSGPEGPEGIKGDEGM
KGEPGMDGQRGEKGEKGEPGFPGVPGRKGQAGVSGIPGKRGYKGEKGEPSAEGAGIKGEP
GAPGQPGQAGPKGDKGDQGIKGDPGHEGPPGPRGLPGPTGEPGKSLINNNENDIRNLHLM
GPPGLPGPPGLPGTPGLKGDVGLPGPPGLDGEKGPRGKSGEQGPIGPPGPEGPRGEGGVI
GLPGPKGDKGDMGPSGSPGLDGPTGEKGVSGPPGHIGLPGLMGQKGEPGEKGDKAELVYG
PAGPPGPAGPVGPLGPPGLSGPKGEPGIGLRGEKGSPGQKGEKGDRGHLGLPGAHGLDGR
PGPVGLIGPAGVPGPAGPKGEMGEKGDMGVAGPIGPQGIPGLVGPPGLKGNRGERGKKGN
RGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNKGQNPFQLAKK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcttggcagtgtgttgtgttcttcttaatcagtattgttgactggttctttctttat
tctgtacccacatttctctcacccctttttcagggtccacctggacgagcaggctttccg
ggagacaaaggatcaatgggcattcctggaagaatgggcttaaagggaaacctgggggag
aagggagcgccaggagagccaggtctgtctatcattggcccacgaggacctcctggacaa
cccggtactagaggatttccaggctttccgggccccattggcttggacgggaaacctgga
cagaatggtccaaaaggtgatatgggtcctcgtggtcctaaaggagtaccaggtgaacct
ggtccaaaaggagagaagggtgtatgtggcgactacactcacaggcagatgttgcccatc
accgtccgcaacatgccctcaataagccctctaatcctaaagcgcctcaagcagggcgag
cccggagcgcaaggaccaccgggacctcctggccccccagggcctccagggactcctgga
ctaactggtgctagcgggcccccgggtaaacccggagaacctggaaaacctggaaaagac
ccaagaatgctaccagggctgaagggcgaacccggtgtacctggacagaagggcgatcgt
ggtgaagctggcccgagcggtcctgaaggcccagagggaattaaaggagatgaaggaatg
aagggtgaaccagggatggatgggcaaagaggagagaagggggagaagggagagcctggt
ttcccaggtgtccctggacgaaagggacaggcaggtgtttctggtatccctggaaaacgg
ggctacaagggagaaaaaggcgagcctagtgctgaaggagctggcatcaaaggagaacca
ggtgccccgggacagcctggacaagctggacccaagggtgacaaaggtgatcaaggcata
aagggtgaccctggccacgaaggcccacctggaccaagaggtttaccaggtccaactgga
gagccaggaaaatctttaatcaacaacaatgaaaatgatatacgcaatctgcatttaatg
ggccctcctggtctgcctgggcctccagggcttcctgggacccccggtttgaagggtgat
gttggacttccaggtccccctggtcttgatggggaaaagggtccaagaggaaagtcagga
gaacagggacccatcggccctcctggaccagagggtccacggggagaaggaggagtcata
ggtttgcctgggccaaaaggagataagggagacatgggcccctcgggatcacctggttta
gatggccctactggagaaaagggggtttcaggcccccctggccatattggattgccaggc
ctaatgggtcagaaaggtgaacctggggagaaaggagataaagcagaactggtctatggg
cctgctggacctccaggacctgcagggccagttgggccattgggacctccaggtttgtca
ggaccaaagggagagccaggaataggcctgagaggagagaagggatcacctggacagaaa
ggagagaaaggagacagggggcatcttggactccctggggctcatggtttagacggcagg
cctggtccagtgggtctgataggaccagctggagtgcctgggcctgcaggaccaaaagga
gaaatgggggaaaagggtgatatgggagtagctggaccaattgggcctcaaggcatccct
ggtttagtaggaccaccaggattaaaaggaaaccggggggagaggggcaagaaaggcaac
aggggggccaaaggggataagggagaccaaggagcccctggattagatgctccgtgtccg
ttgggcgatgatggtttgccagtaccagggtgttggaataaaggtcagaatccgttccag
ctcgccaagaagtaa
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