Caldicellulosiruptor hydrothermalis: Calhy_0715
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Entry
Calhy_0715 CDS
T01346
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K27000
RNA polymerase sigma-H factor
Organism
chd
Caldicellulosiruptor hydrothermalis
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chd03021
]
Calhy_0715
Transcription machinery [BR:
chd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calhy_0715
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
HTH_16
GerE
Relaxase_C
HTH_38
SMC_Nse1
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ADQ06452
UniProt:
E4QDN5
LinkDB
All DBs
Position
775730..776464
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AA seq
244 aa
AA seq
DB search
MSLKEALAIIYNYCDRFFFEFLTRLKNLRRHIALTLQKWLLNFKECPDEELVKYSREGVK
EALEELLSRYQNFVKAKCRMYFLIGADKEDIYQEGMIGLFKAVRDFDETKYPSFRLFAEM
CITRQMITAIKTASRQKHIPLNTYISLNKPVYEENDERTLIDTLADTFISDPEEVMITKE
ELENAINVITECLSPFEFKVLSLYLEGRSYQEIADMIHKDVKSIDNALQRVKKKIEKYLA
PADK
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgaaagaagctttagcaataatatataattattgtgataggtttttctttgaa
ttcttaacaaggcttaaaaacttaaggaggcatattgccttgacattgcaaaaatggctt
ttgaattttaaagaatgtccagatgaggaattggttaaatattcaagagaaggtgtaaaa
gaagctcttgaggagcttctttccaggtatcaaaactttgtaaaggcaaagtgcaggatg
tactttttgattggagctgataaggaggatatttatcaagagggtatgataggtttgttt
aaagctgtgcgtgattttgatgagacaaaatatccttcgtttagattgtttgcagagatg
tgcattacgcggcagatgataactgcaatcaaaactgccagcaggcaaaaacatattcct
cttaacacctacatatcacttaacaagcctgtgtacgaagaaaatgatgaaagaacgcta
attgatacgttagcagacacattcatttctgaccccgaagaggttatgattacaaaggag
gagcttgaaaacgctataaatgttattactgaatgtctttctccttttgagttcaaggtt
ttgagcctttaccttgaaggaaggagttatcaagagattgctgatatgattcacaaggat
gtaaagtcaattgacaatgctcttcaaagggttaaaaagaagattgaaaagtacttggct
ccagctgataaatga
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