KEGG   Chelatococcus sp. CO-6: AL346_19410Help
Entry
AL346_19410       CDS       T04040                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
chel  Chelatococcus sp. CO-6
Pathway
chel03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:chel00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AL346_19410
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chel03400]
    AL346_19410
Enzymes [BR:chel01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AL346_19410
DNA repair and recombination proteins [BR:chel03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AL346_19410
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ALA19184
UniProt: A0A0K2DH57
LinkDB All DBs
Position
complement(4152813..4155353)
Genome map
AA seq 846 aa AA seqDB search
MAEARHLLREYRERRDFTRTAEPDVTAEAGTGEGLLFVVQKHAATRLHYDFRLEWQGVLK
SWAVTRGPSLDPADKRLAVRTEDHPLAYGDFEGIIPKGQYGGGTVMLWDRGTWEPVGDPD
EGLRRGKLTFRLHGERLSGEWALVRMAPKPGEKRENWLLIKHQEETSGRRRPPDILARHT
RSVASGRTMEEIAAGGRTIAPEDVAPKRRARRPAAKAAEKKAGTGGRGGHALPRWVEPQL
ATLVDAAPEGGQWLSEMKYDGYRALVAIGGGTCRVYTRNGKDWTDRFPEIAQAASHLDTS
GTLIDGEIVAFDEKGKTDFSTLQAALQEGGRGLTFFAFDLLWLDGEDVRGRPLTERKDLL
QQLLGEAGPPLIYSTHVVGNASEVNRRLCAAGHEGIIAKRAEDAYRSGRGRSWLKVKCGA
RQEFVIGGYRPSDKKGRTVASLLIGVNEGGKLVYKGRVGAFEGDHLARLEQLLASRGRKT
SPFTELPRDIARRARFVRPDIVVEVGFTEFTREGAVRHGVLKGIREDKAAREVVLETPRG
TAMQEHEARDVIAGIRLSNPDKVLFAEQGVTKADLAAHYERVAGRILPFVSERLLSLVRC
PEGAGTQCFFQKHGNKTVARELKRREITESDGERGVYLYVDDLAGLVAGVQMGTLEYHIW
GSRIDRLDQPDRLVFDLDPDEGLDFAAVRAAAFDLRERLAALGLQTVPLLTGGKGIHVIA
PLVRRADWPMVKAFARGFARLIAGEEPDRYVAQASKAKRAGRIFVDWLRNERGSTAIAPY
STRAKKNAPVATPVGWEELRTLDTAQAFTIADMERRLSMPDPWAGEAEGRQAITKTMLGK
VGAEEG
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atggccgaggcgcggcatctcctcagggaataccgggagcggcgggatttcaccaggaca
gccgaacccgacgtcacggccgaggccggcaccggcgaggggctgctcttcgtcgtgcag
aaacatgccgcgacgcgcctccactacgatttccgcctcgaatggcagggtgttctgaag
agctgggcggtgacacgcggcccgagcctcgaccctgccgacaagcggctcgcggtgcgg
accgaggaccatccgctcgcctatggcgacttcgagggcatcattcccaagggccagtac
ggcggcggcaccgtgatgctgtgggaccgcggcacctgggagcctgtcggcgaccctgac
gagggcctgcgccgcggcaagctgacctttcgcctccacggcgagcggctgtcgggcgaa
tgggccctcgtgcgcatggcgccgaagccgggcgagaagcgggagaactggctgctgatc
aagcatcaggaggaaacctccggccgacgccgcccgccggacatcctggcgcgccatacc
cgcagcgtcgcctccgggcgcacgatggaggaaatcgccgctggggggcgcacgatcgcc
cccgaggacgtcgcgcccaagcggcgcgcccggcggccggcggcgaaggctgcggagaaa
aaggccggcacgggcggccggggcgggcatgcgctgccgcgctgggtggagccgcagctc
gccacgctggtcgacgccgcgcccgagggcgggcaatggctgtcggagatgaaatacgac
ggctaccgcgccctggtcgccatcggcggcggcacctgccgcgtctatacccgcaacggc
aaggactggaccgatcgcttccccgagatcgcgcaggcggccagccatctcgacacgtcg
ggcaccctgatcgatggcgagatcgtcgccttcgacgagaagggcaagaccgacttttcc
accctgcaggcggcgttgcaggagggcgggagaggactgacgttcttcgccttcgatctc
ctgtggctcgacggcgaggacgtccgcgggcgtcccctcaccgagcgcaaggacctgctg
cagcagctcctcggcgaggccgggccgccgctcatctattcgacgcatgtcgtcggcaat
gcgtccgaggtgaaccggcggctgtgcgcggccgggcacgaggggatcatcgccaagcgg
gcggaggacgcctaccgctccggccgcgggcgcagctggctgaaggtgaaatgcggagcg
cgccaggagttcgtcatcggcggctacaggccgagcgacaagaagggccgcaccgtcgcc
tcgctgctgatcggcgtcaacgagggaggcaagctcgtctacaaaggacgggtgggggcc
ttcgagggcgaccatctggcgcggctggagcagctcctcgccagccgcggccgcaagacc
tcgcccttcaccgagctgccgcgcgacatcgcccgccgggcccgcttcgtgcgaccggac
atcgtcgtcgaagtcggctttactgaattcacgcgcgaaggcgccgtccgccacggcgtt
ctgaagggcatccgcgaggacaaggcggcgcgcgaggtggtgctggagacacccaggggg
acggccatgcaggagcacgaagcgcgggatgtcatcgccggcatcaggctgtccaacccg
gacaaggtgctcttcgccgagcagggcgtgacgaaggccgatctggcggcccattacgag
cgcgtggccgggcggatcctgcccttcgtctcggagcgtctcctcagcctcgtgcgctgt
cccgagggggccggcacacagtgcttcttccagaagcacggcaacaagaccgtggcccgc
gagctcaagcgccgcgagatcaccgagagcgacggcgagcgcggcgtctatctctatgtc
gacgatctcgcgggtctcgtcgccggcgtgcagatggggacgctcgaatatcacatctgg
ggctcgcgcatcgatcgcctcgaccagccggaccggctggtcttcgatctcgatcccgac
gaggggctcgacttcgccgccgtgcgcgccgccgccttcgacctgcgcgagcggctcgcg
gcgctcggccttcagaccgtgccgctgctgaccggcggcaagggcatccatgtcatcgcc
cccctcgtgcgccgggcggactggccgatggtcaaggccttcgcccgcggcttcgcccgg
ctcatcgccggggaagagccggaccgctatgtcgcccaggcctcgaaggcaaagcgcgcc
ggccgcatcttcgtcgactggctgcgcaacgagcgcggctccaccgccatcgcgccctat
tcgacgcgggcgaagaagaacgcgccggtcgcgacgccggtgggctgggaggaactgcgg
accctcgacaccgcccaggccttcaccatcgccgacatggagaggcgcctgtcgatgccg
gatccctgggcgggtgaagccgaggggcgccaggcgatcacgaagaccatgctcgggaaa
gtgggcgccgaggagggctga

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