Capra hircus (goat): 102188099
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Entry
102188099 CDS
T02910
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
chx
Capra hircus (goat)
Pathway
chx03013
Nucleocytoplasmic transport
chx03015
mRNA surveillance pathway
chx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102188099 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
102188099 (DDX39B)
03015 mRNA surveillance pathway
102188099 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chx03019
]
102188099 (DDX39B)
03041 Spliceosome [BR:
chx03041
]
102188099 (DDX39B)
Enzymes [BR:
chx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102188099 (DDX39B)
Messenger RNA biogenesis [BR:
chx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102188099 (DDX39B)
Spliceosome [BR:
chx03041
]
Complex C
Other components
EJC/TREX
102188099 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102188099 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
102188099
NCBI-ProteinID:
XP_017894534
EnsemblRapid:
ENSCHIG00000004579
UniProt:
A0A452DQY2
LinkDB
All DBs
Position
23:complement(22205945..22217016)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgatgtggacaatgagctcttggattatgaagatgatgaggtggagacg
gcagctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgtgacttcctgctcaagccagagttgctccgggccatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaagccatc
ctgggaatggacgtcctatgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggctaccctacaacaattggagccagttactggacaggtgtctgtactggtgatgtgt
cacactcgggagttggcttttcagatcagcaaggagtatgagcgcttctccaaatacatg
cccagcgtcaaggttgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtgggtacccctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacacattaaacactttatcttggatgaatgcgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagattcgtccagtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
ggattgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctggatgtccttgaattcaaccaggtggtgatatttgtgaagtctgtgcagcgttgc
attgccctggcccagctcctggtggagcagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcaatttaaagattttcaacgacggatt
cttgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgctttt
aactacgacatgcctgaggattcagacacctacctgcatcgggtggccagagcaggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatataagtgagctgcctgatgagatagacatc
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
