KEGG   Citromicrobium sp. JL477: WG74_06635Help
Entry
WG74_06635        CDS       T04089                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cij  Citromicrobium sp. JL477
Pathway
cij03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cij00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WG74_06635
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cij03400]
    WG74_06635
Enzymes [BR:cij01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WG74_06635
DNA repair and recombination proteins [BR:cij03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WG74_06635
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ALG60545
LinkDB All DBs
Position
complement(1379853..1382342)
Genome map
AA seq 829 aa AA seqDB search
MAKKDDPLAEYNAKRDFSRTKEPAGKAGKSGKDRIFMVQKHDATRLHWDLRLEADGVLKS
WAVTKGPSPDPDIKRLAVRTEDHPMDYATFEGTIPANEYGGGTVMLWDRGTWHPIEGKSA
DDIEEGHLHFVLDGERMKGEWLLIRMKPKKGEKRENWLLRKLDDEHAQEGDALVEKALTS
VDTGRSMAEIAAGREPDKATGEDEAVEPLAEMKHARRGKKAGKPPKFAKPQLATLVDEVP
TGNGWMHEIKFDGYRALIAVAGDKVTVWTRNQNDWTEKFGPLVEAIAALDLPPALIDGEI
IALDKNGNPDFSTLQSVLKRGHGAQGPKDKLAFFAFDLLEVDGEDLTGHSNIERKERLEA
LLSDAEPPIHVADHIIGAGEKLYAQMCGAGQEGIIAKRIDAPYRHSRTKSWVKVKCVQRQ
EFIIVGWSESSAKARPFASLLLATKDGEDLIYRGKVGTGFDSEDLDRLGSKLDRIERKTP
PLDVPKADARKAHWVTPNLVAEIAYAELTAEGRVRHASFLGLRQDKEAKDVGDERKNTAP
SPSASVEISSRDRVIFPDSGETKGDLADYYEAIAPLMLPFATERPLSLVRCPQGRAKKCF
FQKHDNGGFGDGVKAVPIKEKDGGTEDYLFVSDARGLLQCVQMGTIEFHGWGARTGAVEK
PDRMVFDLDPDEGLDFADVREAAMDLRKHLADIGLTSFAMVTGGKGVHVVVPLTPGHSWD
THKSFSERFAKALAQAEPDRFTATMSKAKRKGRIFIDWLRNQRGSTAVMPYSARAREGAP
VAAPVAWNELKKLNNARGFTIGDAKRLHDRAQSKTLAGWGFADQRLPDV
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggcgaagaaggacgacccgctcgccgaatacaacgcgaagcgcgatttctcgcgcacc
aaggagcctgcgggcaaggcaggcaagagcggcaaggaccgcatcttcatggtccagaag
cacgacgccacgcgcctgcattgggatctacggctggaagccgacggcgtgcttaaaagc
tgggcggtgaccaagggcccctcccccgacccggacattaaacggctcgcggtgcggacc
gaagatcatccgatggattacgcgaccttcgagggcaccatcccggcgaacgaatatggt
ggcggcacggtgatgctctgggaccgcggcacctggcacccgatcgagggcaagagcgcc
gacgatatcgaggaaggccacctccacttcgttctcgacggagagcggatgaagggcgaa
tggctgctgatccgcatgaagccgaaaaagggcgagaagcgcgagaactggctgctgcgc
aagctggacgacgagcacgcgcaggaaggggatgcgctggtcgaaaaggcgctgaccagc
gtcgataccggacgctcgatggcggaaatcgccgcagggcgcgagcctgacaaagcaacc
ggcgaagacgaggcagtcgagcctctcgccgagatgaagcacgctcgtcgcggcaagaag
gcaggcaagccgcccaaattcgccaagccgcagctcgccacgctggtcgacgaagtgccc
acgggcaatggctggatgcacgagatcaagttcgacggctatcgcgcgctgatcgcggtc
gcaggcgacaaggtcacggtgtggacccgcaaccagaacgactggaccgagaagttcggc
ccgctggtggaagcgatcgccgctctcgacctgccccctgcgctgatcgacggagagatc
atcgcgctggacaagaacggcaatcctgatttctcgacgctgcaatcggtgctcaagcgc
gggcacggggcacaggggccgaaggacaagctcgccttcttcgccttcgacctgctcgaa
gtggatggcgaagacctgaccggccattccaatatcgagcgcaaggaacgcctcgaggca
ctgctaagcgatgccgagccgccaatacatgtcgcagaccacatcatcggcgctggcgag
aagctctatgcccagatgtgcggtgcgggtcaggaagggatcatcgccaaacggatcgac
gcaccttaccgccacagccgaacgaaaagctgggtcaaggtgaagtgcgtccagcggcaa
gagttcattatcgtcggctggtccgaaagctcggccaaggcgcggcccttcgcatccctc
ctgctcgccacgaaagatggtgaagacctgatctatcgcgggaaggtcggcaccgggttc
gacagcgaagatctcgaccgcctcggcagcaagctcgaccggatcgagcggaagacaccg
ccgctcgacgtgcccaaggccgacgcacgcaaggcgcattgggtcaccccaaatctggtc
gccgaaatcgcctatgccgagctgaccgcggagggtcgggtccgccacgccagcttcctc
gggctgcggcaggacaaggaggcgaaggatgtcggcgacgaacgcaagaataccgcgcca
tccccctccgccagcgtggagatatccagccgcgaccgggtgatcttccccgacagcgga
gagaccaagggcgatctggcggattactacgaagccatcgctccgctgatgctccctttc
gcgaccgaacgcccgctgagccttgtgcgctgcccgcaagggcgcgcgaagaagtgcttt
ttccagaagcacgataacggcggcttcggcgatggcgtgaaggcagttccgatcaaggag
aaggacggcggcaccgaagattacctcttcgtctcggacgcacgcggcctgcttcagtgc
gtgcagatgggcaccatcgagttccacggctggggcgcgcgcaccggcgcggtcgagaag
ccggaccggatggtcttcgatctcgatccagatgaagggctggactttgccgacgtgcgc
gaagcggcgatggacctgcgcaaacacctcgccgacatcggccttaccagtttcgcgatg
gtgactggcggcaagggtgtgcatgtcgtcgtgccactgacgcccggtcattcatgggat
acgcacaagagcttctccgaacgtttcgccaaggcgctggcgcaggccgagcccgaccgg
ttcaccgcgaccatgagcaaggccaaacgcaagggccgcatcttcatcgactggctgcgc
aaccagcgcggcagcacggcggtgatgccctactccgcccgcgcgcgagaaggcgcaccg
gtcgcagcacccgtggcgtggaacgagctgaagaagctaaacaacgcccgcggctttacc
atcggcgatgccaagcggctgcacgatcgcgcgcagtcaaagaccctcgccggatggggc
ttcgccgaccagcgcctgcccgacgtgtga

DBGET integrated database retrieval system