Citromicrobium sp. JL477: WG74_06635
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Entry
WG74_06635 CDS
T04089
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cij
Citromicrobium sp. JL477
Pathway
cij03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WG74_06635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cij03400
]
WG74_06635
Enzymes [BR:
cij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WG74_06635
DNA repair and recombination proteins [BR:
cij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WG74_06635
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALG60545
UniProt:
A0A8D4CI49
LinkDB
All DBs
Position
complement(1379853..1382342)
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AA seq
829 aa
AA seq
DB search
MAKKDDPLAEYNAKRDFSRTKEPAGKAGKSGKDRIFMVQKHDATRLHWDLRLEADGVLKS
WAVTKGPSPDPDIKRLAVRTEDHPMDYATFEGTIPANEYGGGTVMLWDRGTWHPIEGKSA
DDIEEGHLHFVLDGERMKGEWLLIRMKPKKGEKRENWLLRKLDDEHAQEGDALVEKALTS
VDTGRSMAEIAAGREPDKATGEDEAVEPLAEMKHARRGKKAGKPPKFAKPQLATLVDEVP
TGNGWMHEIKFDGYRALIAVAGDKVTVWTRNQNDWTEKFGPLVEAIAALDLPPALIDGEI
IALDKNGNPDFSTLQSVLKRGHGAQGPKDKLAFFAFDLLEVDGEDLTGHSNIERKERLEA
LLSDAEPPIHVADHIIGAGEKLYAQMCGAGQEGIIAKRIDAPYRHSRTKSWVKVKCVQRQ
EFIIVGWSESSAKARPFASLLLATKDGEDLIYRGKVGTGFDSEDLDRLGSKLDRIERKTP
PLDVPKADARKAHWVTPNLVAEIAYAELTAEGRVRHASFLGLRQDKEAKDVGDERKNTAP
SPSASVEISSRDRVIFPDSGETKGDLADYYEAIAPLMLPFATERPLSLVRCPQGRAKKCF
FQKHDNGGFGDGVKAVPIKEKDGGTEDYLFVSDARGLLQCVQMGTIEFHGWGARTGAVEK
PDRMVFDLDPDEGLDFADVREAAMDLRKHLADIGLTSFAMVTGGKGVHVVVPLTPGHSWD
THKSFSERFAKALAQAEPDRFTATMSKAKRKGRIFIDWLRNQRGSTAVMPYSARAREGAP
VAAPVAWNELKKLNNARGFTIGDAKRLHDRAQSKTLAGWGFADQRLPDV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaggacgacccgctcgccgaatacaacgcgaagcgcgatttctcgcgcacc
aaggagcctgcgggcaaggcaggcaagagcggcaaggaccgcatcttcatggtccagaag
cacgacgccacgcgcctgcattgggatctacggctggaagccgacggcgtgcttaaaagc
tgggcggtgaccaagggcccctcccccgacccggacattaaacggctcgcggtgcggacc
gaagatcatccgatggattacgcgaccttcgagggcaccatcccggcgaacgaatatggt
ggcggcacggtgatgctctgggaccgcggcacctggcacccgatcgagggcaagagcgcc
gacgatatcgaggaaggccacctccacttcgttctcgacggagagcggatgaagggcgaa
tggctgctgatccgcatgaagccgaaaaagggcgagaagcgcgagaactggctgctgcgc
aagctggacgacgagcacgcgcaggaaggggatgcgctggtcgaaaaggcgctgaccagc
gtcgataccggacgctcgatggcggaaatcgccgcagggcgcgagcctgacaaagcaacc
ggcgaagacgaggcagtcgagcctctcgccgagatgaagcacgctcgtcgcggcaagaag
gcaggcaagccgcccaaattcgccaagccgcagctcgccacgctggtcgacgaagtgccc
acgggcaatggctggatgcacgagatcaagttcgacggctatcgcgcgctgatcgcggtc
gcaggcgacaaggtcacggtgtggacccgcaaccagaacgactggaccgagaagttcggc
ccgctggtggaagcgatcgccgctctcgacctgccccctgcgctgatcgacggagagatc
atcgcgctggacaagaacggcaatcctgatttctcgacgctgcaatcggtgctcaagcgc
gggcacggggcacaggggccgaaggacaagctcgccttcttcgccttcgacctgctcgaa
gtggatggcgaagacctgaccggccattccaatatcgagcgcaaggaacgcctcgaggca
ctgctaagcgatgccgagccgccaatacatgtcgcagaccacatcatcggcgctggcgag
aagctctatgcccagatgtgcggtgcgggtcaggaagggatcatcgccaaacggatcgac
gcaccttaccgccacagccgaacgaaaagctgggtcaaggtgaagtgcgtccagcggcaa
gagttcattatcgtcggctggtccgaaagctcggccaaggcgcggcccttcgcatccctc
ctgctcgccacgaaagatggtgaagacctgatctatcgcgggaaggtcggcaccgggttc
gacagcgaagatctcgaccgcctcggcagcaagctcgaccggatcgagcggaagacaccg
ccgctcgacgtgcccaaggccgacgcacgcaaggcgcattgggtcaccccaaatctggtc
gccgaaatcgcctatgccgagctgaccgcggagggtcgggtccgccacgccagcttcctc
gggctgcggcaggacaaggaggcgaaggatgtcggcgacgaacgcaagaataccgcgcca
tccccctccgccagcgtggagatatccagccgcgaccgggtgatcttccccgacagcgga
gagaccaagggcgatctggcggattactacgaagccatcgctccgctgatgctccctttc
gcgaccgaacgcccgctgagccttgtgcgctgcccgcaagggcgcgcgaagaagtgcttt
ttccagaagcacgataacggcggcttcggcgatggcgtgaaggcagttccgatcaaggag
aaggacggcggcaccgaagattacctcttcgtctcggacgcacgcggcctgcttcagtgc
gtgcagatgggcaccatcgagttccacggctggggcgcgcgcaccggcgcggtcgagaag
ccggaccggatggtcttcgatctcgatccagatgaagggctggactttgccgacgtgcgc
gaagcggcgatggacctgcgcaaacacctcgccgacatcggccttaccagtttcgcgatg
gtgactggcggcaagggtgtgcatgtcgtcgtgccactgacgcccggtcattcatgggat
acgcacaagagcttctccgaacgtttcgccaaggcgctggcgcaggccgagcccgaccgg
ttcaccgcgaccatgagcaaggccaaacgcaagggccgcatcttcatcgactggctgcgc
aaccagcgcggcagcacggcggtgatgccctactccgcccgcgcgcgagaaggcgcaccg
gtcgcagcacccgtggcgtggaacgagctgaagaagctaaacaacgcccgcggctttacc
atcggcgatgccaagcggctgcacgatcgcgcgcagtcaaagaccctcgccggatggggc
ttcgccgaccagcgcctgcccgacgtgtga
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