Chryseobacterium indoltheticum: EG358_18930
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Entry
EG358_18930 CDS
T06757
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cil
Chryseobacterium indoltheticum
Pathway
cil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EG358_18930 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cil03400
]
EG358_18930 (ligD)
Enzymes [BR:
cil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EG358_18930 (ligD)
DNA repair and recombination proteins [BR:
cil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EG358_18930 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
AZA75686
UniProt:
A0A381JT88
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All DBs
Position
4089134..4091023
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AA seq
629 aa
AA seq
DB search
MLAKSSDEAFDDENWIFEIKWDGYRAVADLSKKNPLFYSRNGISFLSKFQTIVEDFSQQK
HKMILDGEIVAYDENGKPSFQLLQQIGDNPNLALTYQVFDLLWLNGHSTEELPLIQRKEL
LKDALIETDLIKFCDHVPEKGIDFFSHMKKMKLEGMIAKKSDSIYTENSRSTDWLKIKFT
NTEEAIICGFTEPKGSRKAFGALILGKYINDKLIYSGHTGTGFNNELLNQLHERLKKLIV
KTSPFETIPKTNMPVTWTKPELVCEIKYSEITKDGMFRHPVFVAIREDKDAKEISNSITK
NTQKTTKSKSMKTKKNTENTEDEFKNDSEIKLNRHTIKLTNQNKIYFPQDEVSKGDIVEY
YQSVAEYILPHLKNRPLSLNRFPNGIEKSGFYQKDAGDSFPDWIKTTKVYSESTDKYIDY
AICNDKATLAYLNNLGCIDFNPWNSSLPDLEHPDYLVLDLDPSKKNSFDDVIETAQQVKE
VLDLIKIKGYCKTSGSTGIHIYIPMGGSYDYDQVKDFAHILMKQVNDKLPKITTLERSLQ
KRDDKKIYLDYLQNRQGQTLASVYSIRPKEGASVSMPIEWNELKKGLKPTDFTIENALER
IKEKGDLFKPVLGKGIDMMKALELLQDVE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcaaaatcttctgacgaggcttttgatgatgaaaactggatttttgaaatcaaa
tgggatggctatcgtgctgtggctgatttaagtaaaaaaaatcctttattttactcccga
aacggcatttcgtttttatcaaaatttcaaacaatcgttgaagatttttctcagcaaaaa
cacaaaatgattttggatggtgaaattgtagcttacgatgaaaatggaaaaccaagtttt
caactattacaacaaatcggcgacaatccgaatctcgctttaacgtatcaggtttttgat
ttactctggctaaacgggcattctacagaagaattgcctttaattcaaagaaaagagctt
ttaaaagatgcattaattgaaaccgacctgattaaattttgcgatcacgttcctgaaaaa
ggaattgattttttcagtcacatgaaaaaaatgaaactggaagggatgattgctaaaaaa
tctgatagtatttatactgaaaacagccgaagtaccgattggctcaaaataaaattcacc
aataccgaagaagcgataatttgtggtttcacagaaccaaaaggatccagaaaagccttt
ggagctttaattcttggtaaatatatcaatgataaactcatctattcgggacacaccgga
accggatttaataatgaattattgaatcagcttcatgagagactaaaaaaattaattgta
aaaacttcgccgtttgaaaccattcccaaaaccaatatgccggttacatggacgaagccc
gaattggtttgtgaaataaaatattctgaaattacaaaagacggaatgttccgccaccct
gtatttgtagcgattcgggaggataaagacgcaaaagaaatcagcaattcaatcacaaaa
aacactcaaaaaaccaccaaatctaaaagtatgaaaactaaaaaaaatacagaaaataca
gaagatgagtttaaaaatgatagcgaaattaaactgaatcgacatacaataaaactcacg
aatcagaataagatatatttcccgcaagatgaggtcagcaaaggggatattgtggaatat
tatcagtcggtagctgaatacattttaccacatctgaaaaatcgaccgctttctttaaac
cgttttcctaatggaattgaaaaatcaggattttatcaaaaagatgctggtgactctttc
cctgactggatcaaaacaacaaaagtttattctgaatctacagataaatacattgattac
gccatctgtaacgataaagcgacattagcctatctgaataatctgggttgcattgatttt
aatccgtggaattcttcgcttcctgatttggaacatcctgattatctggttttagatctt
gatccctcgaagaaaaatagtttcgatgatgtgattgaaactgctcaacaagtaaaagaa
gttttagatttaataaaaataaaaggttattgtaaaacttccggcagtacgggaattcat
atttatattccaatgggtggcagttacgattatgatcaggtaaaagatttcgcccatatt
ctgatgaagcaggtgaatgacaaacttcctaaaatcacgactttagaacgcagtcttcaa
aaaagagacgacaaaaagatctatctcgattatcttcaaaaccgacaagggcaaactctg
gcaagcgtttacagcatcagaccgaaagaaggagcatccgtttcgatgccgattgaatgg
aacgagctgaaaaaaggattaaagcctactgattttactattgaaaatgccttggagcga
attaaggaaaaaggtgatttatttaagcctgttttaggaaagggaattgatatgatgaag
gcgcttgaattgttgcaggatgtggagtaa
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