Ciona intestinalis (yellow sea squirt): 100176131
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Entry
100176131 CDS
T01056
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100176131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100176131
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100176131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
100176131
NCBI-ProteinID:
XP_002130535
LinkDB
All DBs
Position
14:complement(2792958..2801254)
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AA seq
544 aa
AA seq
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MAEAEDDDSWLYGDEDDGTSNGKKENKEAIVESNANNNTTDVVSNGDNETIEVTQNTAQP
ETPVENNITDKDGEETMNVKKEATTEVKDGEGTQDDSDESDDDVQVTIGTITTGSGTTAD
GAGTFPIPGSGSRTFYRNPVQVLSAPKSAVGKGLDINAPGNINGQAVLDVNLDLLEDKPW
RKPGADISDYFNYGFNEVTWKFYCEKQKRLRAGGDPVPVSLNTSNPVTSPNGRNHTLNAI
LSRFENKQSISTPVMVNRFENTVRSISTLQFTRRKDELLNPGAINSTPEAAPVVSKASAS
PAQPATPNPLFTLPPQVNGPPPPIHFDPSQPPPSLPLGIPPPGFPPPGIRPPGTEFLPLP
PVSGGPFLHSNFLPPPSQQQTYYIPDEMDENHHGGLGPPDMHHRNDENFPNDEDGRHRMI
KKEYDRDRDRDRDRDRDRYSRRPDYRERSRDYNRDRDRDRSRDRDRSRDRDRSRDRDRDR
DRDRRRRDDSPSRHKSSRRRYEDDDRYSKHKKSKKHKHEKEKEDEPDQPPQSETAPSTTE
EPKA
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagcagaagacgacgatagttggctgtacggagacgaagatgatggtacaagt
aatgggaagaaagaaaataaggaagcgattgttgaaagtaatgccaacaacaatacaacg
gatgttgtcagtaatggtgataatgaaaccatagaagtcacacaaaatacagctcaacca
gaaacaccagttgaaaacaacattactgataaagatggcgaagaaactatgaatgttaag
aaagaagcaacaacagaagtgaaagatggagaaggaacgcaagatgattcagatgaatct
gatgatgatgtacaggtcacaataggaacaattacaacagggtctggaacgacagctgac
ggggcgggtactttccctattccgggatcaggcagtagaactttctacagaaatcctgtt
caagttctaagcgctccaaaaagtgcggtagggaaaggattagatattaatgcaccagga
aatattaacggacaagctgtgttggatgttaaccttgatctcttagaggataaaccttgg
agaaaaccaggtgcggatatttccgattattttaactacggtttcaatgaggtaacttgg
aagttttactgcgagaaacaaaaacgattgagggccggtggtgaccctgttcctgtttca
ttgaacacttcgaaccctgtaacttcacctaatggcaggaaccacacactgaacgcaata
ttatcacgatttgaaaacaaacaatccatctccaccccagttatggtgaacagattcgag
aacacagttcgatcgatttccactcttcagttcactcgaagaaaagatgaacttctgaac
ccgggagcaattaactccaccccagaagctgctcccgttgtctccaaagcttccgcttcc
cctgcccaacctgctaccccaaatcctttgttcactctcccccctcaagtaaatggacca
ccacccccgatccactttgatccaagccaacccccaccaagcttaccattaggcatcccc
ccacctggtttccctccaccaggtatccgaccccctgggacagaattccttcccctaccc
ccagtaagcggtgggccattccttcattctaacttcctacccccaccctcacagcaacaa
acatattacataccagatgaaatggatgagaaccatcatggtggacttggaccacctgac
atgcaccataggaacgacgagaactttccgaacgacgaagacggacgtcaccgcatgata
aagaaggaatatgatcgtgaccgtgatcgtgatagagaccgtgaccgtgataggtattca
cgcaggccggattacagagaaaggagtcgggactacaatcgtgatcgtgacagggatcga
tcacgtgacagggacaggtcgcgtgatagggacagatcacgtgacagagatcgggatcgt
gaccgtgacaggaggcggagagatgatagcccatcacgacataaatcatcacgaagacgc
tacgaagacgacgaccggtacagtaagcataagaagtcaaagaaacacaaacacgagaag
gaaaaagaagacgagcctgaccaacccccacagagcgaaacagctccttctaccaccgag
gagccgaaagcataa
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