Ciona intestinalis (yellow sea squirt): 100184080
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Entry
100184080 CDS
T01056
Name
(RefSeq) activating signal cointegrator 1 complex subunit 3
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100184080
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100184080
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
100184080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
ResIII
Helicase_C
AAA_22
Helicase_PWI
AAA_19
Motif
Other DBs
NCBI-GeneID:
100184080
NCBI-ProteinID:
XP_018669768
LinkDB
All DBs
Position
12:430628..454334
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AA seq
2120 aa
AA seq
DB search
MSDFPSFTATLRSFGSISKQTGQLNLNKRSVHGECDVWKELQAIVQVKCKEKRKLNELKA
SLRELLELASDIVGGEEDIKSKHLAATQVFFILYKLDEVDTKTLQEVRHTIGRVDLKSLN
KHHQVVKTILDLTHDGVREQIEKLENDQSSNEFGRKIKFSSDLPVMEISYDFDRKDRTNG
VDIAETFRQKHKDLTRPNSVAQLKTENRVSANTGLPWLRRQMELKFQSTQLVEPTLAVLK
SSQTNEQIQNELCELLGFEHLDLISELLQRRESLVQDEKHLAAINQHRGNFHVRETQQQQ
PTYGAQITVQTDAEKQVAKAIRREEKKAKKLLKSMIQQNDEDDSDFLPRNKPLLLTSEPT
FSLRNNLRLPAAEKFPGVYDGQTVTQQSAAFVGGVRMALPEGVDVKNTKRFEEVSIPATI
GYAGQPWPLVKITELDEIGQMAFNGIKKLNTIQSRVFETAYRTNENLLICAPTGAGKTNV
AMLSIVKEIIQNVESGVIQLDKFKIVYVAPMKALAAEMAENFGRRLSPLGVSVRELTGDM
QLTKKEIQSTQMLITTPEKWDVVTRKSTSDVALARLVRLLIIDEVHLLHDERGPVLETLV
ARTLRQVETQQTMIRIVGLSATLPNYIDVARFLRVNPYETVAKNLQNNNQVLVFVHARNA
TVRTAQAILELARENNETSLFDCRQMDGFSQAEKQVQRSRNKEVRELFNWGLGVHHAGML
RADRTMLEKLFAKGLIRVLCCTATLAWGVNLPAHAVVIKGTQVYNAKQGSFVDLGILDVM
QIFGRAGRPQFDTTGEGTIITTHNKLSHYLALLTRQHPIESQFVDCLVDNLNAEISLGTV
NTVDDGVRWLSYTYLFVRLRKNPLVYGISALQLENDPTLFKWQHELIVMAAMKLNKAHMI
RYVQRTGYFHPTDLGRTSSHFYIKYRSIETFNELINSTMDISAIFSMISKSHEFEQIKVR
DDELTELDDLKDDFCHLPIKAGPEDTEGKANILFQTFISRGDVRSFSLSSDLMYIAQNAG
RIVRGVFEIVLKQDRARLAGLLLKLCKSVERRLWAEDSPLRQFGPRLTNDVLRKIEDKNL
TIEKILDSSASEIGHLLHHPRIGEKVRKCAQEIPRVELEVTIQPITRTILRIKVVMKPDF
TWNNNSHGNTSEAFWIWVQDPVSDHMYHSDYVLMPKKTVVRGEAINLTFTIPLTEPHPTQ
YLVKVESDRWFGAGTVCPITFKHLILPDRHPPHTELTDLEPLPITALKDEKFESVYNFSH
FNPIQTQIFHCIYHHDTNVLIGAPTGSGKTVAAELAIFRMLRTQPGAKAVYVAPLKALVR
ERMKDWEKRLKHKLGLKLVELTGDIAPDMRAVARADVIITTPEKWDGVSRSWNTRGYVRK
VSLLIIDEIHLLGQDRGPVLEVIVSRTNFISSHTEKAVRVVGLSTALANARDLADWLGIK
QMGLFNFRPSVRPVPMEVHIQGFSGKHYCPRMASMNKTCFQAIQTHSPTKPVLIFVSSRR
QTRLTALDLIAHLGGENDPKQWMHMDEWEMEELTHMVRDPNLRLTLAFGIGLHHAGLMER
DRSLVEKLFSEQKIQSLIATSTLAWGVNLPAHLVIVKGTEYFDGKQGRYEDFPITDVLQM
MGRAGRPQYDDKAVAVILVHDVKKAFYKKFLYEPFPVESSLLQVIDDHLNAEIVAGTISN
KQEAMDYLTWTYFFRRLLMNPSYYGLDDTDHDCVNYYLSKLLERNIVELRMSGCVAMGND
DDDVMLESTNGGRIASFYYLSHLTLRLLNEDMRPEMPLDDLLKLLSDAQEYHELPVRHNE
DSINSDLAKELPIKVDCNTFDSAHTKTLLLLVAHFQRSSLPSTDYATDLKSVLDQAIRVL
QAYVDYSADVGWLSTSLRCMHIIQMVSQASWFHENNLMTLPHVERNKLFIFNNLKFKKGK
VENLPQLLSVYQQSPNAVNKILKQYFSADEVNKICNHLSALPLVGLELSVRGWWADHPQS
EDQRIVVDAYDRSIRDQSTWLVVHADQEYFLSIKLQKSTIGGRHKDDKAVTPRFPKPKLE
GWFLVLGDRENRELVALKRLNTLKRETTETLSFFTPQRVGRMILTLWLVSDSYLGLDQLR
DVRLDVIASDIASQSNQEVK
NT seq
6363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgactttccaagtttcacagcaacgttaagatcgtttggctcaatttcaaagcag
actggacaacttaacttaaataagagatctgtacacggcgaatgtgatgtatggaaagaa
ttacaagcgatagttcaagtgaaatgtaaagaaaaaagaaagttaaatgaactgaaggcg
tcactaagggagttactggaattagcatcagatattgttggtggtgaagaagatatcaaa
tcaaagcatcttgctgcaactcaagtcttctttattctttataaacttgatgaagtggat
accaaaacacttcaggaagttagacacaccattggtcgcgttgatttgaaatcgttgaac
aaacaccaccaagtggtgaaaacaatcttggatctaacacacgatggtgtacgtgagcaa
atcgaaaaactcgaaaatgatcaaagttcaaatgaatttggaagaaaaataaagttttca
agtgatcttccagtgatggagatttcttacgactttgatcgcaaagatcggacgaacggg
gttgatatcgcagaaacatttcgccaaaaacataaagatcttactcggccaaacagtgtt
gcgcagttaaaaactgaaaatcgagtttctgcgaacactggtttaccatggttaagaaga
caaatggaattgaaatttcagtcaactcagttagttgaaccaacattggctgttttgaag
tcaagtcaaactaatgaacaaattcaaaatgagctttgcgagcttcttggcttcgaacac
ttagacttaatatctgaattgcttcaacgaagagaaagtttagttcaagatgaaaaacac
ttggctgcaattaatcaacatagaggaaacttccacgtaagggaaacccagcaacaacaa
ccaacatatggagctcaaataactgttcagaccgacgcagaaaagcaagttgcaaaagcg
attcgaagagaagagaaaaaggcaaagaaacttcttaaatcaatgattcagcaaaatgat
gaagatgactctgactttttaccaaggaacaagccacttcttctaacatccgaaccaaca
ttttcacttcgaaataatctacgcttgccggctgccgagaaatttcctggagtttacgac
ggtcagactgttacccaacaaagtgcggcatttgttggaggtgtaaggatggcgctacct
gaaggtgttgacgttaaaaatacaaaaagatttgaagaagtttcgattcctgccaccatt
ggttacgctggacaaccttggccacttgttaagatcactgagttggacgagatcggtcaa
atggcgttcaatggcatcaagaaattaaacacgattcagtctcgtgtgtttgaaactgcg
tatcggacgaatgaaaacttgcttatttgcgcgcccacgggtgctgggaaaactaacgta
gcaatgttgagtattgttaaagagattattcaaaacgtggagagcggggttattcaactt
gataagttcaagattgtatacgtggcaccaatgaaagctctcgctgcagaaatggccgag
aattttggtcgccgtctttccccactaggtgtctctgtacgtgagctaacaggagacatg
caattaacgaagaaggaaatacaaagcactcagatgttaattacgacccctgagaaatgg
gatgtcgttactcggaagtcaacaagtgatgttgctcttgcacgccttgttcgtctcctc
atcattgatgaagttcatctacttcacgacgagagaggtcccgtgcttgaaacactcgtt
gcaaggacgctgagacaagttgaaacacagcaaactatgattcgaattgttggactttca
gctactttacccaactatattgatgtggcaaggtttttacgagttaacccttacgaaact
gtcgcgaaaaatctccaaaataataaccaggttttggtgttcgttcatgcacgtaacgcg
acagtacgtactgcgcaagcaattcttgaactcgcaagggaaaataatgaaacgagttta
tttgattgtcggcagatggatggatttagtcaagcagaaaaacaggttcaaagatcacgt
aataaagaagttcgtgaacttttcaactgggggttgggggttcaccacgcagggatgtta
cgtgcagatcgaacgatgctggaaaagttatttgcaaagggtttgattcgagttttatgt
tgtacggcaactctagcttggggtgtcaacctaccagcgcacgcagttgttattaaaggc
acgcaagtctataacgcaaagcaaggatccttcgtggatttgggaatcttagatgttatg
cagatctttggtcgagctggccgtccacagttcgatacaactggtgaaggcacgattata
acaacacataataagttgtcccattatcttgcattacttacacgacaacatccgattgaa
agtcagttcgttgattgtttggtcgacaatctgaatgctgagatttcgcttggtacggta
aacacagtcgatgatggggtaagatggctgtcgtacacttatctattcgtgaggctgcgt
aaaaatccacttgtttatgggatatctgctttgcagttagagaatgatcctacacttttc
aaatggcagcatgagttaatagtaatggctgccatgaagctgaacaaagctcatatgatc
agatatgtgcaaagaacaggatactttcacccaacggacctaggaagaacttcatcgcac
ttctacatcaaatatcgatcgattgaaacttttaacgaacttatcaactcgacaatggat
atatcggcaatcttttcaatgatctcgaaatctcatgagttcgaacaaattaaggtacgc
gatgatgaactgacagagctggatgacctgaaagatgatttctgtcaccttcctattaaa
gctggtcctgaggacacggaggggaaagccaacattctcttccagacgtttatctcgcgt
ggtgacgtgaggagcttctcgttatcatcggatcttatgtacattgctcaaaacgcaggt
cgtatcgttcgtggagtttttgaaattgtgttgaaacaagatagagctcgtttggccgga
ctgctgctcaagttatgcaaatccgtcgagcgtagactgtgggcagaggactcgccactt
cgtcagtttggacctcgtcttaccaacgacgttcttcgtaaaatcgaagataaaaatttg
acgatcgagaaaattttagattcttctgcgagtgaaattggccatttactccaccatcca
agaattggtgaaaaagttcgtaaatgcgcgcaagaaataccgagggttgaactggaggtg
acgattcaaccgatcacgcgaacaatacttcggattaaagtcgtcatgaaacctgacttt
acttggaataataattcacacggaaatacatctgaagctttttggatttgggttcaagat
ccagtatccgatcatatgtatcacagtgattatgttttgatgcctaaaaagacggttgtc
cgaggtgaagcaatcaaccttacttttaccattcctcttactgaaccccaccccactcaa
tatcttgttaaagttgaatctgatcgatggtttggggcggggacagtttgtccaatcacg
ttcaagcatctcattctacccgaccgacacccaccccacactgaactgacagatttggag
ccgttgcccataactgcccttaaagatgaaaagtttgaatcagtttataatttcagtcat
tttaatccgattcaaacccagatatttcattgtatttaccatcacgatacaaatgtttta
attggtgctccaacaggttctggtaaaacagtcgcagcagaacttgcgatatttcgtatg
ttgcgaacgcagcctggagccaaagcagtttatgtggctcctctaaaagctctcgtccgt
gaaagaatgaaagattgggaaaaacgactcaaacataaacttggcttaaaacttgtggag
ctgacgggtgacatcgcgccggacatgcgtgccgtggcacgtgccgacgtcatcattaca
accccagagaaatgggacggggtatcccgtagttggaacacaaggggttatgttcggaaa
gtctcgcttcttataattgatgagatacatttgttgggtcaagacaggggaccagtgttg
gaagttattgtttcgcgcacaaactttatatcttctcacacagagaaggcagttcgtgtt
gttggtctctcgacagctcttgctaacgctagagacttagctgactggctgggaattaag
cagatgggtttgttcaatttccgaccatcggttcgtcccgttccgatggaagttcacatt
caaggtttctccgggaagcactactgccctcgtatggcctcgatgaacaaaacttgtttt
caagccatacaaacgcactcccccaccaaacctgtccttatatttgtatcgtcacgacga
cagacacggttgactgcacttgacttaatagcgcacctcggtggcgagaacgacccaaag
caatggatgcacatggatgaatgggagatggaggagttaacgcacatggttcgcgatcca
aaccttcgtcttacgcttgcatttggtatcggactccaccatgcaggactcatggagcgt
gatcgctctctagtggagaaactattctcggagcaaaagattcagtcgttaattgccacc
tcgaccctcgcatggggggtgaacttacccgctcacctcgtcatcgtcaagggaacggaa
tatttcgacggcaaacaaggaagatacgaagattttcccatcacagatgttttacaaatg
atgggtcgtgctggtagacctcaatatgacgataaagctgttgctgttattcttgttcac
gatgtaaaaaaagctttttataaaaaatttctgtatgaaccttttcctgttgaatcaagt
ttattgcaggttatagacgaccatttaaatgcggaaatagttgccggaactatcagcaac
aaacaagaagccatggattacttaacgtggacttatttcttcaggagacttctcatgaac
ccatcctattatgggctggatgatacagatcatgattgcgtgaattactatttatccaaa
ctactcgagcgtaacatcgttgagttaagaatgtcaggttgtgttgctatgggcaacgac
gacgatgatgtcatgttggaatcgaccaatggcggaagaattgcttcgttttattacctc
agtcatctaacattaagattacttaacgaagacatgagacctgagatgccactagatgac
ttactaaagttattgagtgacgcacaggaatatcatgagcttcctgttcgacacaatgaa
gattcaattaacagtgacttggccaaagaactcccgataaaagttgattgcaacactttt
gattcggcgcacacgaaaactcttctacttcttgtcgctcacttccaaagatcatctttg
ccttcaacagattacgcaactgatctcaaatctgtgcttgaccaagcgattcgtgtcttg
caggcttatgtggattacagtgctgatgtcggttggctctctacctcactccggtgcatg
catattatccagatggtgtcgcaagctagttggttccatgaaaataacttgatgacgtta
ccccacgttgaacgcaacaaacttttcatttttaataatttgaagttcaaaaaaggaaaa
gtcgaaaatttgccacagttgttatcagtttaccaacaatcacctaatgcagtcaataag
attttaaaacaatatttctcggctgatgaagtcaacaagatttgtaatcatttatctgca
ttaccattggttgggttggaactcagtgttagaggttggtgggctgatcatccacagtct
gaagatcaacgcatcgttgttgatgcttatgatcgttcaataagagaccaaagcacttgg
ttagtcgttcatgcagaccaagaatattttctttcaatcaagttacaaaaatccactatt
ggtggacggcataaagatgataaagcagttacgcccaggtttcctaaacctaaacttgaa
ggttggtttcttgtgcttggggatcgagagaacagagaactagttgcattgaagagactt
aatactttaaaacgagaaacaacggaaacgttgtcattctttacaccccaacgcgttgga
aggatgattcttacactgtggcttgtgtccgattcatatcttggtttggaccaattacgt
gatgtacgtcttgacgtcatagcttcagatattgcctcacagtcaaatcaagaagtcaaa
tga
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