Chryseobacterium indologenes: CEQ15_00570
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Entry
CEQ15_00570 CDS
T04932
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cio
Chryseobacterium indologenes
Pathway
cio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ15_00570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cio03019
]
CEQ15_00570
03009 Ribosome biogenesis [BR:
cio03009
]
CEQ15_00570
Enzymes [BR:
cio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEQ15_00570
Messenger RNA biogenesis [BR:
cio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ15_00570
Ribosome biogenesis [BR:
cio03009
]
Prokaryotic type
rRNA helicases
CEQ15_00570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF5761
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ASE60116
UniProt:
A0A1Z3VX71
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All DBs
Position
122471..124162
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AA seq
563 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVDQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKSA
TKIEINERFIPTGEDIIKAQVGGVFEKLFTEHEDLFEFDDSLIPDLSNFTKEELVHQLLQ
FQLKDLALYYKDKHDLAEQKLSSRDDDYSRRDRGRDRDRDRGRDRDRGRDRDRGGKPRRK
DENMVRFFFNLGKKDHLKKLDVLDIINKATAGGKTKKRAEIGDIEILEKFSFFEVEKSFK
DNVLSNIQSMKFKGKDMRAEVAN
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatatccttaaggcaattggcgaactg
ggttacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgatttgatcgcacttgcgcaaacagggacaggcaagacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttcgaaggacataaagaattactctaagtacatgaaagac
atcaaaactacagcagtttatggtggaagcagtattgtagatcagatgagatctttgaag
gataagccacagattattgtgggaactcctggtagagtaattgatcttatcaacagaaaa
gcattagacttttctgctattcattggttggtattagatgaagccgatgaaatgctttct
atgggattcaaagacgaattggaaaccattctgagcgaaactccggaaactaaacagact
ttcttattctcggctacgatgaataaagaagtggaaagaatttccaaaaactatcttacc
aagccacaccgtatttcagtaggttctatcaacgaagtgaagaagaacattactcacgaa
tactacgtggtaggttaccgtcagaaaaaagaagcgttgaagagattgatcgatgctaat
cctaaccagtattctattatcttctgtagaacgagaatggaaactcaggaggtagctgat
ttcctgatgcagaacggttatgctgctgatgctcttcacggagacctttctcaggcgcag
agagatacggtgatgaagaaattcagattaaaaaacattgatattcttgtagcaacagac
gttgcagcaagaggtctggatgtaaactctctgactcacgtgatccatttctctttacct
gatgatcctgaagtattcgttcacagaagcggaagaacaggtagagcagggaaggacggt
atttctatggctttaatcaagccggaagaaagcagaaagctgaagcagatcaaatctgct
acaaagattgaaattaacgaaagatttattcctaccggtgaagatattatcaaagctcag
gtaggtggtgtttttgaaaaattattcacagagcacgaagatcttttcgaatttgatgat
agcttaattcctgatttgagcaacttcacaaaagaagaattggtacaccagttgttgcag
ttccaattgaaagatcttgctttatattacaaagataagcatgaccttgctgagcagaaa
ctgagcagcagagatgacgattactcaagaagagaccgtggccgtgacagagatagggac
agaggtcgcgacagagatcgtggaagagacagagaccgtggcggaaaaccaagaagaaaa
gatgaaaacatggtaagattcttcttcaaccttgggaaaaaagaccatttgaaaaaactc
gatgttttagatattatcaacaaagctaccgctggtggaaaaaccaagaaaagagctgaa
atcggtgatattgaaattttagagaaattctctttcttcgaagttgaaaaatcattcaaa
gacaatgtccttagcaatattcagtccatgaaattcaaaggaaaagatatgagggctgaa
gtggcaaactaa
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