Citrus sinensis (Valencia orange): 102614656
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Entry
102614656 CDS
T02983
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102614656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cit03400
]
102614656
DNA repair and recombination proteins [BR:
cit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102614656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
102614656
NCBI-ProteinID:
XP_006485749
LinkDB
All DBs
Position
3:join(9271145..9271184,9271305..9271354,9271675..9271707,9272321..9273394,9273919..9274473,9274551..9274661,9274801..9274890,9274990..9275061,9275488..9275598,9276670..9276796,9278163..9278362,9279162..9279314,9280141..9280341)
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AA seq
938 aa
AA seq
DB search
MDDEQNKLPELKLDAKQARGFLSFYKTLPNDTRAVRFFDRRDYYTAHGENATFIAKTYYH
TTTALRQLGTGSDALSSVSVSKNMFETIARDLLLERTDHTLELYEGSGSNWRLVKSGTPG
NLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTKRVLGLAEFLDDSHFTN
VESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLV
RGSVEPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRA
LNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDD
TALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLPYIRSALQQYEGQFSS
LIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSALKNEQESL
ERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRK
DGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLL
SFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWVNFIPNDCKLIRGKSWFQI
ITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFM
QEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHE
LTALAHENANEFNTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFAN
FPESVVTLAREKAAELEDFTPSAVISDDAKIEVGSKRKRISDPNDMSRGAARAHQFLKEF
SDMPLETMDLKEALERVKKMKDDLEKDAGDCCWLQQFF
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgagcaaaacaagcttcccgagctcaaattagatgcgaagcaagcacgaggg
tttctctcattctacaaaaccctaccaaatgacacaagggctgttcggttcttcgatcgc
agggactactatactgctcatggtgaaaatgcaactttcattgcaaagacttactaccat
accactactgctttgcgacaattgggtactggatctgatgctctttccagtgtaagtgtt
agcaagaatatgtttgaaacgattgcccgtgatctgcttctggagagaaccgaccacact
cttgagctctatgagggtagtggctcaaattggagactggtgaaaagtggtactcctgga
aatctaggtagttatgaagatgttttgtttgcgaacaatgagatgcaggatacccctgtc
atcgttgcactatttccaaacttccgcgaaaatgggtgcactattgggttgggttatgtt
gatttaacaaaaagagtacttggattggctgaatttcttgatgatagccactttacaaat
gtggaatcagctttggttgctcttggttgcaaggaatgccttttgcctacggaggctgta
aaatctagtgagtgtaaaactctgcgtgatgctctgacgagatgtggggtgatgttaact
gagagaaagaagactgagtttaaaacaagggacttagtgcaggatcttgataggcttgtc
agaggttctgtggaaccagttcgagatttagtttctggatttgaaattgcacctggtgct
ttaggggcattactgtcttatgctgaattactttcagatgagagcaattatggaaactat
tatattcgaaagtatagtctggacagttacatgaggttagattctgctgctatgagggca
ctaaatgtcctggaaagcaaaactgatgcaaacaaaaattttagtttatttggtctcatg
aatagaacttgtactgctgggatgggaaagcggttactgcatatgtggctaaagcaacct
ttattagatgtgaatgaaatcaatgccaggctcgacattgttcaggcatttgtggatgat
actgcactgcgccaagatctgaggcagcatctgaaaagaatctcagatatagagcgactg
atgcacaatcttgagaagagaagagcaggtttgcagcagatagttaaactttatcagtca
agtatccgacttccatacattagaagtgccctgcagcaatatgaaggacaattttcttca
ttgatcaaggaaagatatttagatcccctggagtcattaacagatgatgatcacttgaat
aagttcattgctctagtagaaacttctgttgaccttgatcaacttgagaatggagaatac
atgatttcatcaagttatgatactggtttatcagcactaaaaaatgagcaagagtctcta
gagcgtcaaatacacagtttgcacaaacaaactgcttctgatctcgatctgcctgtagat
aaggcgttaaagctagataaaggcacacaatttggacatgtctttagaattacaaagaag
gaagagccaaaaatacggaaaaagctcaccactcagtttattgtccttgaaactcgaaag
gatggagtgaaatttacgaacacaaagcttaaaaaattaggagaccagtaccaaaaggta
ctcgaggagtataagaattgtcaaaaggagcttgttaatcgagttattcaaactgcagta
accttctctgagatattcaagtctttggccaccatgctttctgaattggatgtcttactc
agttttgctgacttggcttctagctgtcctactccatacacaagaccagacatcaaccca
cctgatgtgggagatattatattagaaggaagcaggcatccttgtgtggaagctcaagac
tgggtgaattttataccaaatgattgtaaacttattaggggaaagagttggttccagatc
atcacaggacctaacatgggtggaaagtccacatttatccggcaggttggtgtgaacatt
ctgatggcacaagttggttcttttgttccttgtgacagagctagcatttctgtacgtgat
tgtatttttgctcgtgttggtgctggtgactgccaactacgtggggtttctacctttatg
caagaaatgcttgagactgcatcaatattgaagggagctactgataggtcattgataatc
attgatgagttgggtcgtggaacatccacttacgacggatttggtttggcttgggccata
tgtgaacaccttgttgaagagatcagagcacctactctgttcgcaacccactttcacgaa
ctgactgcattagctcatgaaaatgccaatgaattcaatacaaagcaaatggttggtgtg
gcaaactatcatgtcagtgctcacattgattccacaagtcgcaagctgactatgctgtat
aaggttgaaccgggagcttgtgatcaaagttttggcattcatgttgcagaatttgcaaat
tttcctgaaagtgttgtcacccttgctagagaaaaagctgctgaattggaagatttcacg
ccttctgcagtcatttcagatgatgctaaaatagaggtgggatccaagagaaaaagaata
agtgatcccaatgacatgtccagaggtgcagctcgggcacaccaatttttgaaagagttc
tctgatatgccactggagacaatggacttgaaggaggctctggaacgagtaaaaaagatg
aaggatgacttagagaaggatgcaggagactgctgctggctccagcaattcttctag
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