Callithrix jacchus (white-tufted-ear marmoset): 100396550
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Entry
100396550 CDS
T03264
Symbol
SCN3A
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 3 subunit alpha
KO
K04836
voltage-gated sodium channel type III alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
100396550 (SCN3A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cjc04040
]
100396550 (SCN3A)
Ion channels [BR:
cjc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100396550 (SCN3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
PKD_channel
GPHH
ATP-synt_B
IQ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
100396550
NCBI-ProteinID:
XP_054114293
Ensembl:
ENSCJAG00000006101
LinkDB
All DBs
Position
6:61227073..61312496
Genome browser
AA seq
2000 aa
AA seq
DB search
MAQALLVPPGPESFRLFTRESLAAIEXRAAEEKAQKPKKEQDNDDENKPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVMNKGKAIFRFSATSALYILSPLNPVRKI
AIKILVHSLFSMLIMCTILTNCVFMTLSNPPDWTKNVEYTFTGIYTFESLIKILARGFCL
EDFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPSDSAFEINTTSYFNGTMD
SNGTFVNVTMSTFNWKDYIGDDSHFYVLDGQKDPLLCGNGSDAGQCPEGYICVKAGRNPN
YGYTSFDTFSWAFLSLFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLIL
AVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEEAQAVAAASAASRDFSGIGGLGE
LLESSSEASKLSSKSAKEWRNRRKKRRQREHLEGNNKGERDSFPKSESEDSVKRSSFLFS
MDGNRLTSDKKFCSPHQSLLSIRGSLFSPRRNSKTSIFSFRGRAKDVGSENDFADDEHST
FEDSESRRDSLFVPHRHGERRNSNVSQASMSSRMVPGLPANGKMHSTVDCNGVVSLVGGP
SALTSPTGQPLPEGTTTETEVRKRRLSSYQISMEMLEDSSGRQRAMSIASILTNTMEELE
ESRQKCPPCWYRFANMFLIWDCCDAWLKVKHLVNLIVMDPFVDLAITICIVLNTLFMAME
HYPMTEQFSSVLTVGNLVFTGIFTAEMVLKIIAMDPYYYFQEGWNIFDGIIVSLSLMELG
LSNVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKINDDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMC
LIVFMLVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDYVKN
KIRECFRKAFFRKPKVIEIHEGNKIDSCMSNNTGIEISKEFNYLRDGNGTTSGVGTGSSV
EKYVIDENDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESELEESKEKLNATSSSE
GSTVDVALPREGEQAEIEPEEDLKPEACFTEGCIKKFPFCQVSTEEGKGKIWWNLRKTCY
SIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWV
AYGFQTYFTNAWCWLDFLIVDVSLVSLVANALGYSELGAIKSLRTLRALRPLRALSRFEG
MRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNMTTGNMFNVSEVNN
FSDCQALGKQARWKNVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRDVKLQPLYED
NLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLG
SKKPQKPIPRPANKFQGMVFDFVTRQVFDISIMILICLNMVTMMVETDDQGKYMTLVLSR
INLVFIVLFTGEFVLKLVSLRHYYFTIGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLF
RVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYV
KKEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPDTIHPGSSVKGD
CGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKF
DPDATQFIEFSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRV
LGESGEMDALRIQMEDRFMASNPSKVSYEPITTTLKRKQEEVSAAIIQRNFRCYLLKQRL
KNISSNYNKEAIKGRIDLPIKQDMIIDKLNGNSTPEKTDGSSSTTSPPSYDSVTKPDKEK
FEKDKPEKESKGKEVRENQK
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcactgttggtacccccgggacctgaaagcttccgcctttttactagagaa
tctcttgctgctattgaanaacgtgctgcagaagagaaagcccagaagcctaaaaaggaa
caagataatgacgatgagaacaaaccaaagccaaatagtgacttggaagctggaaagaac
cttccatttatttatggagacattcctccagagatggtgtcagagcccctggaggacctg
gatccctactatatcaataagaaaacttttatagtaatgaataaaggaaaggcaattttc
cgattcagtgccacctctgccttgtatattttaagtccactaaaccctgttaggaaaatt
gctatcaagattttggtacattctttattcagcatgcttatcatgtgcactattttgacc
aactgtgtatttatgaccttgagtaaccctcctgactggacaaagaatgtggagtacaca
ttcactggaatctatacctttgagtcacttataaaaatcttggcaagagggttttgctta
gaagattttacatttcttcgtgatccatggaactggctggatttcagtgtcatcgtgatg
gcatatgtgacagagtttgtggacctgggcaatgtctcagcgttgagaacattcagagtt
ctccgagcattgaaaacaatttcagtcattccaggtttaaagaccattgtgggggccctg
atccagtcggtgaagaagctttctgacgtcatgatcctaactgtgttctgtctgagcgtg
tttgctctcattgggctgcagctgttcatgggcaacctgaggaataaatgtttgcagtgg
cccccaagtgattctgcttttgaaatcaacaccacttcctactttaatggcacaatggat
tcaaatgggacatttgttaatgtaacaatgagcacatttaactggaaggattacattgga
gatgacagtcacttttatgttttggatgggcaaaaggaccctttactctgtggaaatggc
tcagatgcaggccagtgtccagaaggatacatctgtgtgaaggctggtcgaaaccccaac
tatggctacacaagctttgacacctttagctgggctttcctgtctctatttcgactcatg
actcaagactactgggagaatctttaccagttgacgttacgtgctgctggaaaaacgtac
atgatattttttgtgctggtgattttcttgggctcgttttatttggtgaatttaatcctg
gctgtggtggccatggcctatgaggaacagaatcaggccactctggaagaagcagaacaa
aaagaggccgaatttcagcagatgcttgaacagcttaagaagcaacaggaagaagctcag
gcagttgcagcagcatcagctgcttcgagagatttcagtggaataggtgggttaggagag
ttgttggaaagttcttcagaagcatcaaagttaagctccaaaagtgctaaagagtggagg
aaccgaaggaagaaaagaaggcagagggagcaccttgaaggaaacaacaaaggagagaga
gacagctttcccaaatccgaatctgaagacagtgtgaaaagaagcagcttccttttctcc
atggatggaaacagactgaccagtgacaagaaattctgctcccctcatcagtctctgttg
agtatccgtggctccctgttttccccaagacgtaatagcaaaacaagcattttcagtttc
agaggtcgggcaaaggatgttggatctgaaaatgactttgctgatgatgagcacagcaca
tttgaagacagcgaaagcaggagagactcactgtttgtgccacacagacatggagaacga
cgcaacagtaacgttagtcaggccagtatgtcatccaggatggtgccagggcttccagca
aatgggaagatgcacagcactgtggattgcaatggtgtggtttccttggtgggtggacct
tcagctctaacgtcacctactggacaacctctcccagagggcaccaccactgaaacggaa
gtcagaaagagaaggttaagttcttaccagatttcgatggagatgctggaagattcctcc
ggaaggcaaagagccatgagcatagccagcattctgaccaatacaatggaagaacttgaa
gaatctagacagaaatgcccaccctgctggtatagatttgccaatatgttcttgatctgg
gactgctgtgatgcatggttaaaagtaaaacatcttgtgaatttaatagttatggatcca
tttgttgatcttgccatcactatttgcattgtcttaaataccctctttatggccatggaa
cactaccccatgactgagcaattcagtagtgtgttgactgtaggaaacctggtcttcact
gggatcttcacagcagaaatggttctcaagatcattgccatggatccttattactatttc
caagagggctggaatatctttgatggaattattgtcagcctcagtttaatggagcttggg
ctgtcaaatgtggagggattgtctgtactgcgatcattcagactgcttagagttttcaag
ttggcaaaatcctggcccacactaaatatgctaattaagatcattggcaattctgtgggg
gctctaggaaacctcaccttggtgttggccatcatcgtcttcatttttgctgtggtcggc
atgcagctctttggtaagagctacaaagaatgcgtctgcaagatcaatgatgactgtacg
ctcccacggtggcacatgaacgacttcttccactccttcctgattgtgttccgcgtgctg
tgtggggagtggatagagaccatgtgggactgtatggaggttgctggccaaaccatgtgc
cttattgttttcatgttggtcatggtcattggaaaccttgtggttctgaacctctttctg
gccttattgttgagttcatttagctcagacaatcttgctgctactgatgatgacaatgaa
atgaacaatctccagattgcagtaggaagaatgcaaaagggaattgattatgtgaaaaat
aagatacgggagtgtttccgaaaagccttttttagaaagccaaaagtaatagagatccat
gaaggcaataagatagacagctgcatgtccaataatactggaattgaaataagcaaagag
tttaattatcttagagatgggaatggaaccacaagtggtgtgggtactggaagcagtgtt
gaaaaatatgtaattgatgaaaatgactacatgtcattcataaacaaccccagcctcact
gtaacagtgccaattgctgttggagagtctgactttgaaaatttgaatactgaagagttt
agcagtgagtcagaactagaagaaagcaaagagaaattaaacgcaacgagctcatctgaa
ggaagcacagttgatgttgctctaccccgagaaggtgaacaagctgaaattgaacccgag
gaagaccttaaaccagaagcttgttttacagaaggatgtattaaaaagtttccattctgt
caagtaagtacagaagaaggcaaaggaaagatctggtggaatcttcggaaaacctgctac
agcattgttgagcacaactggtttgaaactttcattgtgttcatgattcttctcagtagt
ggtgctttggcctttgaagatatatacattgaacagcgaaagactatcaaaaccatgcta
gaatatgctgacaaggtctttacctatatattcattctggaaatgcttctcaaatgggtt
gcttatggatttcaaacatatttcaccaatgcctggtgctggctagatttcttgatcgtt
gatgtttctttggttagcctggtagccaatgctcttggctactcagaactcggtgccatc
aaatccttacggacattaagagctttaagacctctaagagcgttatcccggtttgaaggc
atgagggtggttgtgaatgctcttgttggagcaattccctctataatgaacgtgctgttg
gtgtgtctcatcttctggctgatctttagcatcatgggtgtgaatttgtttgctggcaag
ttctaccactgtgttaacatgacaacgggtaacatgtttaacgttagtgaagtgaacaat
ttcagtgactgtcaggctcttggcaagcaagctcggtggaaaaacgtgaaagtaaacttt
gataatgttggcgctggctatctcgcactgcttcaagtggccacatttaaaggctggatg
gatattatgtatgcagctgtggattcacgagatgttaaacttcagcctctctatgaagac
aatctgtacatgtatttatactttgtcatctttatcatctttgggtcgttcttcactctg
aatctattcattggtgtcatcatagataacttcaaccagcagaaaaagaagttcggaggt
caagacatctttatgacagaggaacagaaaaaatattacaatgcaatgaagaaacttgga
tccaagaaacctcagaaacccatacctcggccagcaaacaaattccagggaatggtcttt
gattttgtaaccagacaagtctttgatatcagcatcatgatcctcatctgcctcaacatg
gtcaccatgatggtggaaaccgatgaccagggcaaatatatgaccctagttttatcccgg
atcaacctcgtgttcattgttctgttcacgggagaatttgtgctgaagctcgtctccctc
agacactactacttcactataggctggaacatctttgattttgtggtggtgattctctct
attgtgggtatgtttctggctgagatgatagaaaagtactttgtgtcccctaccctgttc
cgagtgatccgtcttgcccggattggccgaatcctacgtctgatcaaaggagcaaagggg
atccgcacgctgctctttgctttgatgatgtcccttcccgcgttgtttaacatcggcctc
ctgctcttcctggtcatgttcatctacgccatctttgggatgtccaactttgcctatgtt
aaaaaggaagctggaattgatgacatgttcaactttgagacctttggcaacagcatgatc
tgcctgttccaaattacaacctctgctggctgggatggattgctagcacctattcttaat
agtgcaccacccgactgtgaccctgacacaattcaccctggaagctctgttaagggagac
tgtgggaacccatctgttgggattttcttttttgtcagttacatcatcatatccttcctg
gttgtggtgaacatgtatatcgcagtcatcctggagaacttcagtgttgctactgaagaa
agtgcagagcccctgagtgaggatgactttgagatgttctatgaggtttgggagaagttt
gatcccgatgcaacccagtttatagagttctctaaactctctgattttgcagctgccctg
gatcctcctcttctcatagcaaaacccaacaaagttcagctcattgccatggatctgccc
atggtcagtggtgaccggatccactgccttgatattttatttgcctttacaaagcgtgtt
ttgggtgagagtggagagatggatgcccttcgaatacaaatggaagaccggtttatggcc
tcaaacccctccaaagtctcttatgagcctattacaaccactttgaaacgtaaacaagaa
gaggtgtctgctgctatcattcagcgtaatttcagatgttatcttttaaagcaaaggtta
aaaaatatatcaagtaactataacaaagaggcaattaaagggaggattgacttacctata
aaacaagacatgattattgacaaattaaacgggaactccactccagaaaaaacagatggg
agttcctctaccacctctcctccttcctatgatagtgtaacaaaaccagacaaagaaaag
tttgagaaagacaaaccagaaaaagaaagcaaaggaaaagaggtcagagaaaatcaaaag
taa
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