Kaistella jeonii: NCTC13459_00110
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Entry
NCTC13459_00110 CDS
T06863
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cjg
Kaistella jeonii
Pathway
cjg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13459_00110 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjg03019
]
NCTC13459_00110 (cshA)
03009 Ribosome biogenesis [BR:
cjg03009
]
NCTC13459_00110 (cshA)
Enzymes [BR:
cjg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13459_00110 (cshA)
Messenger RNA biogenesis [BR:
cjg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13459_00110 (cshA)
Ribosome biogenesis [BR:
cjg03009
]
Prokaryotic type
rRNA helicases
NCTC13459_00110 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
VEI94535
LinkDB
All DBs
Position
1:130733..132517
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AA seq
594 aa
AA seq
DB search
MNLFTETNLSPAILQAIGELGFESPTEIQKQTIPFISTDIRDLIALAQTGTGKTAAFSLP
ILDMIDDGSRKIQFLVLCPTRELCLQITKDIKNYSKYMPNIKTTAVYGGSSITDQIRSLR
DKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLETILRETPDTKHN
YLFSATMNKEVERISKSYLTSPHRIVVGSLNEVKKNIKHEFYVVGYRFKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKQS
TKIDIVEKKIPTGKEVIEAQVGGVFTKLLTEHENLFEFDASLIPDLSAFTKEELVHQMLQ
LQLRDMALYYLDKNDLADQKFNADDGRGDRGGRDRGRGDRDSRGGRDRDRGGDRRDGGFR
NSRDGGSRDGGSRDFGNREGGDREFRERKPRKNNGDMVRFFFNLGKRDNLKKIDMLEIIN
KSTEKSRKRPDIGEIEILEKFSFFEVEKSFKDEVLKGLQTQKFKGKDMRAEESK
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatctaagtccggcaatcttgcaggcaattggcgaactg
ggctttgaaagcccaacagaaatccaaaaacaaactattccttttatctctacagatata
cgcgatctaatcgcacttgcgcagacaggaacaggcaaaacagcagcattttcgctaccg
attttggatatgattgacgacgggagtcgcaaaatccaatttttggtgctttgtccaacc
agagaactttgtttgcagattaccaaagacattaagaattattcgaaatacatgcccaac
atcaagactacagcagtttatggtggaagcagtattaccgaccaaatccgctctctacga
gacaaaccgcaaattattgtgggaactccgggacgtgtgatcgaccttattaacagaaaa
gcacttgatttttctgagattcaatggctcgttcttgacgaagctgatgaaatgttatca
atgggtttcaaagatgatttggaaacaattctacgtgaaactcctgatacgaaacacaat
tatttattctcggcaacgatgaataaagaagtggagcgtatttctaaaagttatttaacg
agtccgcaccgtattgttgttggttccttaaatgaagtgaagaaaaacatcaaacacgaa
ttttacgtggttggttaccgtttcaagaaagaagctttgaaaagattgatcgatgcaaat
ccaaatcaatattcaattcttttctgcagaacccgtatggaaactcaggaagttgcagat
ttcttgatgcagaatggttacgcagcagatgcacttcacggtgatctttcgcaagctcaa
cgtgatacagtaatgaagaaattcagactgaaaaatatcgatatcttagtggcgaccgat
gttgcagcgagaggtttagatgttgattcactgacgcacgttattcactattctttaccg
gatgatcctgaagtattcgttcacagaagtggaagaacaggtcgtgcaggaaaagacgga
atttcaatgtcattgatcaaacctgaagaatcaagaaaattaaagcagatcaagcaatca
acgaagattgatattgttgagaagaagattcctaccggaaaagaagtgatcgaggctcaa
gttggcggtgttttcaccaaattactgacagaacacgaaaacttatttgaattcgatgca
tctttaattccagacttatctgcatttaccaaagaagaattggttcaccagatgctgcag
ttgcagttgagagatatggcgctttattatttagataaaaatgatttggctgaccagaaa
ttcaatgctgatgacggaagaggcgatagaggaggaagagatcgtggaagaggcgacaga
gattcccgtggcggaagagaccgtgatagaggtggcgatagaagagatggcggatttaga
aattccagagatggaggaagtagagacggcggaagcagagattttggaaatcgtgaaggc
ggtgacagagaattcagagaaagaaagccaagaaaaaacaatggcgatatggtgcgattt
ttctttaacttaggaaaacgtgacaatctgaaaaaaattgatatgttggagatcatcaac
aaatcaactgagaaatccagaaaaaggccagatattggtgaaatcgagattttagaaaaa
ttctctttctttgaagtagagaaatcattcaaagatgaagttttgaaagggttacaaact
caaaaatttaaaggaaaagatatgagagctgaagaatctaaataa
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