Coturnix japonica (Japanese quail): 107311526
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Entry
107311526 CDS
T04297
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
cjo
Coturnix japonica (Japanese quail)
Pathway
cjo04120
Ubiquitin mediated proteolysis
cjo04137
Mitophagy - animal
cjo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107311526 (PRKN)
04120 Ubiquitin mediated proteolysis
107311526 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
107311526 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjo04131
]
107311526 (PRKN)
04121 Ubiquitin system [BR:
cjo04121
]
107311526 (PRKN)
03029 Mitochondrial biogenesis [BR:
cjo03029
]
107311526 (PRKN)
Enzymes [BR:
cjo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
107311526 (PRKN)
Membrane trafficking [BR:
cjo04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
107311526 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
107311526 (PRKN)
Xenophagy
Other xenophagy associated proteins
107311526 (PRKN)
Ubiquitin system [BR:
cjo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
107311526 (PRKN)
Mitochondrial biogenesis [BR:
cjo03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
107311526 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
107311526
NCBI-ProteinID:
XP_032299424
LinkDB
All DBs
Position
3:40123262..40627594
Genome browser
AA seq
472 aa
AA seq
DB search
MFALKGVFSFSVFVRFNSSHGFPVELGLEASILQLKEAVAQRQGVPADQLRVIFAGRELS
NDLTLQNCDLVQQSIVHIVQNPQKNSDKDETEDNNTGGILKTLERVPESLTRIDLSSSIL
PSLSAGLAVILDTKEPNISPPSEKSGAACYNSFYVFCKSSCQAVKPGKLRVRCSECKQGT
LTLARGPSCWDDVLIPNRITGVCRSPKCNGNVAEFYFKCGAHPTTDSETSVALNLIATNS
RGITCITCTDIRSPVLVFQCVHRHVICLDCFHLYCVTMLNDRQFIYDPDLGYSLPCVAGC
ADSLIKEVHHFRILGEEQYNRYQRYGAEECVLQMGGLLCPTPSCGAGLLPEPGVRKIVCE
PGNGIGCGFVFCRECKEEYHEEECSSFLSTQGAAAQKGYAVDENAAMQARWEEASKETIK
KTTKPCPNCHIPVEKNGGCMHMKCPRPQCRFEWCWNCGVEWNRTCMGNHWFD
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctttaaaaggtgttttctctttttcagtgtttgtcaggttcaactcaagccat
ggcttcccggtggagcttgggttggaagccagcatcctccagctgaaggaggcggttgcg
cagcgacagggagttccagctgaccagctgcgggtgatctttgcagggagagagctcagc
aacgacttaacgctgcagaattgtgacctggtccagcaaagcatcgttcatattgttcag
aatccacagaagaatagtgataaggatgagactgaagacaacaatactggaggcattcta
aaaacgttggaaagagtacctgaaagtctaactcgcatagatctcagttccagcatcctc
ccgtcgctgtctgcagggttggctgttattctggatactaaagaacccaacatttcccct
ccgtctgaaaagtcaggtgcagcttgttacaacagcttttatgttttttgcaaaagttcc
tgccaagctgtgaaacctgggaaactgagggtccgatgcagtgaatgtaagcaaggcaca
ctcacactggcaaggggcccatcttgctgggatgatgtgctgattccaaacagaataaca
ggtgtttgccggtccccaaagtgcaatggaaatgtagcggagttttactttaaatgtgga
gcacacccaacaactgacagtgaaacatctgtggctctgaacctcattgctacaaacagt
cgcggtatcacatgtataacatgcacggatattaggagtcctgtgcttgtgttccagtgt
gtgcatcgccatgtcatttgcctagattgtttccatttgtactgtgtgacaatgttaaat
gatcgtcagttcatctatgacccagatcttggctactccctcccatgtgtagctggctgt
gcagactccttgattaaagaggttcatcacttcaggattctgggagaagaacagtataac
cgctaccagcgctatggtgcagaggagtgcgtgctgcagatggggggcctgctgtgtcca
acgcccagctgtggcgcaggtctgctacctgaaccaggagtgaggaagattgtatgtgaa
ccaggcaatggaataggctgtgggtttgtgttctgccgtgaatgtaaagaagaataccat
gaagaggaatgcagctctttcctcagcacacagggagctgcggcccaaaagggatatgca
gttgatgaaaacgcagccatgcaagcccggtgggaagaggcatctaaagaaacaatcaag
aaaacaaccaagccatgtcccaactgccatattccagtggagaaaaatggtggctgcatg
cacatgaaatgtcctcgacctcagtgcaggtttgagtggtgctggaactgtggcgtggag
tggaacagaacctgcatgggcaatcactggtttgactga
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