Caldicellulosiruptor acetigenus 6A: Calla_1830
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Entry
Calla_1830 CDS
T01600
Name
(GenBank) RNA polymerase, sigma-24 subunit, SigH, ECF subfamily
KO
K27000
RNA polymerase sigma-H factor
Organism
clc
Caldicellulosiruptor acetigenus 6A
Brite
KEGG Orthology (KO) [BR:
clc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clc03021
]
Calla_1830
Transcription machinery [BR:
clc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calla_1830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
HTH_16
GerE
HTH_23
HTH_38
SMC_Nse1
DUF1676
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
AEM74412
UniProt:
G2PU61
LinkDB
All DBs
Position
complement(1923267..1923902)
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AA seq
211 aa
AA seq
DB search
MTLQKWLLNFKECSDEELVKYSREGVKEATEELLSRYQNFVKAKCRMYFLIGADKEDIFQ
EGMIGLFKAVRDFDETKYPSFRLFAEMCITRQMITAIKTASRQKHIPLNTYISLNKPVYE
ENDERTLIDTLADTFISDPEEVMITKEELENAINVITECLSPFEFKVLSLYLEGRSYQEI
ADMIHKDVKSIDNALQRVKKKIEKYLAPADK
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
ttgacattacaaaaatggcttttgaattttaaagaatgttcagatgaggaattagtgaaa
tattcaagagaaggagtaaaggaagcaactgaagagcttctttccaggtatcaaaacttt
gtgaaggcaaagtgcaggatgtactttttgattggggctgataaggaggatatttttcaa
gaaggtatgataggtctgtttaaagctgtgcgtgattttgatgagacaaaatatccttcg
tttagattgtttgcagagatgtgcattacacgccagatgataactgcaatcaagactgcc
agtaggcaaaaacatattccgcttaacacctacatatcacttaacaagcctgtgtacgaa
gaaaatgatgaaagaacgctaattgatacgttagcagacacattcatttctgaccccgaa
gaggttatgattacaaaggaggagcttgaaaacgctataaatgttattactgaatgtctt
tctccttttgagttcaaggttttgagcctttaccttgaaggaaggagttatcaggagatt
gctgatatgattcacaaggatgtaaagtcaattgacaatgcacttcagcgggttaaaaag
aagattgaaaagtacttggctccagctgacaaatga
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