Campylobacter lari NCTC 11845: UPTC3659_1162
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Entry
UPTC3659_1162 CDS
T03552
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cln
Campylobacter lari NCTC 11845
Pathway
cln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UPTC3659_1162 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cln03019
]
UPTC3659_1162 (rnr)
03016 Transfer RNA biogenesis [BR:
cln03016
]
UPTC3659_1162 (rnr)
Enzymes [BR:
cln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
UPTC3659_1162 (rnr)
Messenger RNA biogenesis [BR:
cln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UPTC3659_1162 (rnr)
Transfer RNA biogenesis [BR:
cln03016
]
Prokaryotic type
tRNA degradation factors
UPTC3659_1162 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AJD01999
UniProt:
A0A0A8HVQ5
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All DBs
Position
1167804..1169744
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AA seq
646 aa
AA seq
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MKELFNQLSYGLNANEITNKNKQIIRELLTCDIIKFYKNKYYLKDGFTFGKIDISINGTG
FLESFDPAFKRDLLIENKNLKGANYADIVVAKLLPLKKKRPSAKVILILKRAHETSLVMT
KKYGEAVLGVNIQTGLTCALKASQKSLKALPLGTILKIENHDNNITEVIGHIDDDFVDEK
ISLALFNKNAIFDNLCENEAKAYGDKVDASMYPSRKDLRNLNFCTIDPIDAKDFDDAIYY
DKNEHAIYVAIADVSAYVHAYSAIDKEARSRGFSIYFPHIAIPMLPRALSENICSLKPNE
DRLAFCFKISLDQNNEVVKEELFEAIINSKRRFNYDEVDEYLQTQEDLGAINWLYEVFKI
TQNLRKKRLKNACEFKTQELRMTLDENNKLIKTRLENDTASHNLIEDCMLLANKAAAKLI
DIGVFRNHLTPDYKKIDQLLADLSTLSIDINPKNNVIELFKDIQVLANELNIREEVDKLI
IKAQKKAEYSSENAGHFGLGFDKYTHFTSPIRRYSDLILHRLLKAKINNDEKMFNYLLLN
IQSTCEELSLLEREADKVAWHFMDRKFARWAKENIGKRFKALVVENQSSLQVKLNDDIKG
ALITIIGSRANLLENVEIEITEVDIVSAKIFGKITKHFSLERNQNV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattatttaatcaattaagttatggtctaaatgctaatgaaattaccaataaa
aacaagcaaatcattagagaattattaacttgtgatattattaaattttataaaaataaa
tactatttaaaagatggctttacttttggtaaaattgacatttctattaatggaacggga
tttttagaaagttttgatcctgcttttaagcgtgatttactcatagaaaataaaaattta
aaaggagcaaattatgctgatatagttgtggcaaaattactccctcttaaaaaaaagcgt
ccaagtgctaaagttattttaatacttaaaagagcccatgaaacttctttggttatgact
aaaaaatacggagaagcagtccttggagtaaatattcaaacaggacttacatgtgcctta
aaagcctctcaaaaatctttaaaagctctgcctttaggaactattttaaaaatagaaaat
catgataataatatcactgaagtgataggacatattgatgatgattttgtagatgaaaaa
atttccttagcactttttaataaaaatgcaatttttgataatttatgtgaaaatgaagca
aaagcctatggagataaagttgatgcaagtatgtatccatcaagaaaagatcttagaaat
ttaaatttttgcactattgatccaattgatgcaaaagattttgatgatgcaatttattat
gataaaaatgagcatgctatttatgtagctatagctgatgtaagcgcttatgtgcatgct
tatagtgctattgataaagaagcaagatcaaggggtttttcgatttattttcctcatatt
gctatacctatgttaccaagagctttgagtgaaaatatttgctcactaaaacctaatgaa
gataggttagcattttgttttaaaataagtttagatcaaaacaatgaagtggttaaagag
gagctttttgaggctattattaactcaaaacgccgttttaattatgatgaagttgatgag
tatttacaaacacaagaagatttaggcgcaatcaattggctttatgaggtttttaaaatc
actcaaaatttacgaaaaaaacgattaaaaaatgcttgtgagtttaaaacccaagagcta
agaatgactttagatgaaaataataaactcataaaaacacgccttgaaaatgacacagcc
tcgcataatttaatcgaagattgcatgcttttagctaataaagctgcagcaaaactcatt
gatataggagtttttagaaatcacttaactcctgattataaaaaaatagatcaattacta
gccgatctttcaacacttagtatagatattaatcctaaaaataatgtcatagaattattt
aaagacattcaagtcttagcaaatgagctaaatataagagaagaagtagataaactcatc
atcaaagcacaaaaaaaggcagaatattctagtgaaaatgcgggacattttggcttaggt
tttgataaatatacccactttacaagccctattagaagatattctgatcttattttgcat
agacttttaaaggctaaaatcaacaatgatgaaaaaatgtttaattatttacttttaaat
atacaaagtacttgtgaggaattaagcttactagaaagagaagcagataaagttgcttgg
catttcatggatagaaaatttgcaagatgggcaaaagaaaatataggaaaaagatttaaa
gctttggtggtagaaaaccaaagttcattacaagtaaaattaaatgatgatattaaagga
gctttgattactatcataggttcaagggcaaatttattagaaaatgtggaaatagaaatc
actgaagtagatattgttagtgctaaaatttttggcaaaatcaccaagcattttagttta
gaaagaaaccaaaatgtataa
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