Mageeibacillus indolicus: HMPREF0868_0621
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Entry
HMPREF0868_0621 CDS
T01181
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
clo
Mageeibacillus indolicus
Pathway
clo03030
DNA replication
clo03430
Mismatch repair
clo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0868_0621
03430 Mismatch repair
HMPREF0868_0621
03440 Homologous recombination
HMPREF0868_0621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clo03032
]
HMPREF0868_0621
03400 DNA repair and recombination proteins [BR:
clo03400
]
HMPREF0868_0621
Enzymes [BR:
clo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0868_0621
DNA replication proteins [BR:
clo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0868_0621
DNA repair and recombination proteins [BR:
clo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0868_0621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADC91794
UniProt:
D3R187
LinkDB
All DBs
Position
complement(1176397..1180374)
Genome browser
AA seq
1325 aa
AA seq
DB search
MADFVHLHMHTEYSLLSGANRISELPRRIAELGMSACAITDHGVMYGALEFYQACRKENI
KPIIGCEVYVALNGRLAKDGVADRRTAHLILLAENNCGLRNLNKLVTLSYTEGFYGKPRV
DHELLALYHEGLIALSGCIEGEIPLALRRGDFAGACELARQYQDIFGSENFFLEMQATGL
PEQNMVNSGLIRIAKKLGIPPVATNDCHYMQQTDATAHEILLCIKTGKKLNDEHRPRIGS
DQLYIKSPSEMAAAFPDLPEALANTVRIAERCKAEFEFGVLHLPKFKQPEEFSDSVAYLT
TKCRAGLERRLAQAAFAPRETYEERLKYELSVINSMGYTDYYLIVWDFIDYAKRNGIFVG
PGRGSGAGSLAAFCLGITNIDPLRYNLIFERFLNAERVSMPDFDIDFCFERRQEVIDYVY
RKYGTERVCQVITFGTMAAKAVVRDVARVLDYPLPETDKLAKMIPGVLGMTLKKALNINA
DLKMLYEKDPQVRQLIDYAQILEGLPRHASTHAAGVIICGEPVVNYAPLAKNDEALVVQY
TKNYIESIGLLKFDFLGLRTLTVLRDAAAAIKVNYGREIDFDQLDLADEKVFNMLGRGET
DGVFQLESSGMTSFIKELRPTSLEDIIAGISLYRPGPMEQIPRYVAARHNPALISYDHPL
LRPILQVTYGCIVYQEQVMQIVRDLAGFSMGMADIVRRAMAKKKPKELATYEGLFLFGGH
DFKGNKVPGCIANGVEENVGRKIFNEVLAFAGYAFNKPHAASYAIVAYYTAWLRLYYPTE
FMAAILNSFIGDLSKAAHYVQACRQLGIEVLPLNVNYSQVKFATEGKNKIRFALGAIKNV
GFGAIREVVAEREANGLFKDPGDFWRRTANLSLNRKMQESLIRAGALDCFNIDRARLLTA
VVTYLNTVSAGSGSCLAGQFSLFDGPEGESISVAEPVYLPVKAFSSLEKLMMEQELIGLY
LTGHPLADYRAQVAAFSVADSSWLLPSVDEQGQVIDERRAADGDSVKFMAFVLSVTERIT
RQSTKMARIVAEDFISRFEVVAFPKVWERLGRSLNEGGVYKLYGRVQRRDESENACLILQ
RAERVDELVDKSLLSGSSGSGEANRGSGGSGCGTQNDGSNGGPGTLSGDSLVADTQGNGG
PAENTDLQALNTARGEADCMATAEFLRHPATDVADNAPPEVYAKLAAALAEPVEPPHIPP
VPHPDDIAKINKAKVAKRHVAISGSHAAATNVTTHDAGYSLICRYEPQVDPHKLQKLLLL
FKAHPGKTPTAVYVVRTAKLECLPTVYHIKLTPEFMAELAEFWGLDNLEVKLADTEKFKN
DTPSK
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttgttcatttgcatatgcatacggagtacagcctgctcagcggggctaat
cgaatcagcgaactgccgcgccgcattgctgaacttggcatgtcagcctgtgccattacc
gaccatggagttatgtacggagccttagaattttatcaggcttgtcgtaaagaaaatata
aagccgattatcggctgtgaagtttatgttgcgctgaacgggcgattggccaaagacgga
gtggctgatcgccggacggcgcatcttattttattggcagaaaataactgcggcttgcga
aatttaaataagttggttacgctcagctatacggaaggcttttatggtaaaccacgggta
gatcatgagcttttggcactctatcacgagggcttgatagctctttcaggttgtatcgag
ggagagataccacttgcactgcggcgcggtgactttgctggagcctgtgagctggcgcgg
cagtatcaagatattttcgggtcggaaaatttctttttggaaatgcaggcgactgggctg
ccggagcagaatatggttaacagtggtttgatccgcatagccaaaaaacttggtattcca
ccggttgccaccaatgattgtcattacatgcagcaaactgatgctacggcacacgaaata
ttgctttgtattaaaacaggtaaaaagcttaacgatgagcatcgccctcgtattggttcc
gatcagttgtacatcaaaagtccgtccgagatggctgctgcttttcctgatttgccggaa
gctctggccaataccgtgcgtattgccgaacgctgtaaggcggagttcgagttcggcgtt
ttacacctgcctaaattcaagcaaccggaggagttctccgattcggtagcttatttgacg
accaaatgccgtgcaggactggaacgaagacttgcccaagctgcttttgctccgcgggaa
acttatgaagaacgcctgaaatatgaattgtccgttattaattcaatgggctatacggat
tattaccttattgtttgggattttattgattatgccaagcgcaacgggatttttgtcgga
cctgggcgtggatcgggcgcaggttcattagctgccttttgtttggggataaccaatatc
gaccccttgcgctataatctgatttttgaaagatttttgaatgccgaacgtgtaagtatg
ccggactttgatatcgacttttgctttgaacgtcgccaagaagtgattgattatgtttat
cgcaaatatggtacggagcgggtttgccaggtgataactttcgggacaatggctgccaag
gctgtggtcagagatgttgcccgagtgttggactacccattgccggaaactgataagctt
gccaaaatgatccccggtgttttaggtatgaccttgaaaaaagccttaaatataaatgcc
gacctaaaaatgctatatgagaaagatccgcaggtaaggcagctgatcgactatgctcaa
attttagaaggtttgccgcgacacgcctcaactcatgcggccggggtgataatttgtggg
gagccggtagttaattatgcaccgctggccaaaaatgacgaagctttggtcgtgcaatat
accaaaaattatattgaaagcatcggtttattgaaatttgattttttgggtttgcgtact
ctcacggtcctgcgagatgcggcagcggcgattaaggtaaattacggccgggaaattgac
tttgatcagttagatttggcagatgaaaaagttttcaatatgttagggcgtggcgaaacg
gacggggtgtttcaattggaaagctctggcatgacctctttcatcaaagagttgcgtccg
acttctttggaagacataatagccggtatatccttatatcgtcctggccctatggagcag
attccacgttatgtggcggctcggcataatcctgctttgatatcttatgaccacccgttg
ttgcggcctattctgcaagttacttatggttgtatcgtatatcaggaacaggttatgcaa
attgtgcgggatttggctggtttttccatggggatggctgacatcgttcgccgtgccatg
gccaaaaagaagccgaaagagctggccacttatgaaggcttgtttttattcggcggacat
gatttcaaaggaaataaggttccgggctgcatagctaatggggttgaagaaaacgtcggc
cgcaagatattcaacgaagttttagcttttgctggttatgcatttaataaaccgcacgcg
gcatcttatgcgattgtcgcctattatacggcttggctgcgcctatattatcctacggag
tttatggcggcgattttaaacagttttatcggtgatttaagcaaagcagcgcactacgtc
caagcttgccggcaacttggaattgaagttttgccgctgaatgtaaattacagccaagtt
aagttcgccacggaaggaaaaaacaaaatccgctttgccctaggtgcaataaaaaatgtc
ggttttggggcgattcgagaggtggtagccgaacgtgaggccaatggtttattcaaagat
cccggcgatttttggcggcggacagctaatctcagtcttaatcgtaaaatgcaggaaagc
ctgattagagctggagctttggattgttttaacatcgaccgggcgcgtttgcttacggct
gtcgtcacgtatttaaatacggtctctgccggttcgggttcctgtttggcggggcagttt
tctttgtttgatggtccggagggggagtcgataagcgtggctgagccggtttacttgccg
gttaaagcgttttcttctttggaaaaacttatgatggagcaggagctgatcgggttgtat
ctgaccgggcatcctctggctgattatcgagcgcaagttgccgctttttctgtcgcggac
agctcttggctcttgccgagcgttgatgaacaggggcaggtgattgatgaacggcgggcg
gctgacggcgacagtgttaaatttatggcatttgttctgtcggttacagagcggatcacc
cggcaaagcaccaaaatggccaggattgttgctgaggattttatttctcggtttgaagtt
gttgcctttcctaaagtgtgggaaagactgggcagaagtctgaacgagggtggagtatat
aagctgtacgggcgggtgcagcggcgggacgaaagcgaaaatgcctgtcttattttgcag
cgagctgaaagggtggatgagcttgtcgataagtcgttacttagtggctctagcggttct
ggtgaagctaaccgcggctccggtggctctggctgtggtactcagaacgatggcagtaac
ggtggccctgggacacttagcggtgactctcttgtcgctgacactcagggcaatggcggt
cctgctgaaaatactgacctacaagcgttgaataccgctcgcggtgaagcagactgtatg
gcaacggcagagtttttacgccatccggccaccgatgtggcagataacgcgccgcccgaa
gtttacgctaaattggcagctgctctagcagagccggttgaaccgcctcacattccaccg
gtgccgcatccggacgacatcgccaaaattaataaagcaaaagtggccaagagacatgtg
gcaatcagcggctctcatgcagcggcaaccaacgtaaccacccacgatgcgggctacagt
ttgatttgccgctatgaaccgcaggtagatccacataaactgcaaaagctgttacttctg
ttcaaggcgcatcccggcaaaacacctacggctgtttatgttgtccgtacggctaaattg
gaatgtttgccaacagtttatcacataaaattaacccccgaatttatggctgaattagcc
gaattctgggggttggacaatcttgaagttaaattggctgataccgaaaagtttaaaaac
gatacaccgagtaagtag
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