Cyclopterus lumpus (lumpfish): 117745067
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Entry
117745067 CDS
T09199
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04510
Focal adhesion
clum04512
ECM-receptor interaction
clum04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117745067 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117745067 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117745067 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clum04147
]
117745067 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
clum00536
]
117745067 (col6a4a)
Exosome [BR:
clum04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117745067 (col6a4a)
Glycosaminoglycan binding proteins [BR:
clum00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117745067 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
117745067 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
VWA_CoxE
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
117745067
NCBI-ProteinID:
XP_034408993
Ensembl:
ENSCLMG00005019806
LinkDB
All DBs
Position
16:complement(312157..394047)
Genome browser
AA seq
2712 aa
AA seq
DB search
MEGRRGLLLSLIMAVCFYCNTAEKTVCTQEAVADIVFMVDGSWSIGTENFQQIRQFLSTL
VNSFDVGPEQVRIGLVQYSTTPRSEFLLNTYQSKKDILQYISSLPYMGGGTQTGLGLDFM
LNEHFVEKAGSRGGQNVPQIAVVITDGKSQDNVESHAQDLKRKGIVLYAIGIKDADEDQL
TEIANEPHSQHVYSVSDFAALQGISQSIVQTLCTTVEEVKRQLLQLSQECAKATVADIVF
LVDGSSSIGISNFQEIRQFLRSIVNGLDIGPDKVRIGLAQYSDETTTEFLLKDHMDKNSL
LAAVEALSYQTGGTETGEAITYLQNNYFTEDAGSRASQRVPQIAVVITDGDSTDDVNAPA
KSLRQHGVIVFGIGVGEANRKELESIANRPPDRFLSSIANYQALKMLKDRLLHTVCISVE
DQRQALAERFADIFFLVDSGMSPTDFQQVRTLLTRLVNQLNIGASAYRLGLAQYGPDIRV
EFLLNALQTKEDTQTAVKRFRQRRLQPNEPRKLGSALEFASTNLFTTEAGSRADQGYRQF
LVVISGKESDDPVYRESRLIKSSGVTVVGMSVGASMQEMRLVATAPYIYESITNVPALRA
IFEREELETILTGDCKAAKLADIVFIVDESGSIGTPNFQLVRTFLHSVVSGLEVSPSRVR
VGIVTYNEKSTAQVYLNTFNDKKELLKFIKILPYRGGGTNTGEALKYALKEVFIPQRGSR
RAKGVQQVAVVITDGESQDNVSTAAANLRRDGITVYAVGVKDANDAQLVEMASYPSHKHK
FIVDSFAKLKSLEQSLQKILCHNILRQAVSISTRRTGIKEGCVQTDEADIFFLIDHSGSI
YPKDFKDMKMFITEFLHTFRIGPQHVRMGVVKYADSADLEFDLTEYANAKTLEKAVEGIR
QIGGGTETGRALEFMGPHFDRAMVTRGHKVPEYLVVITDGKSSDEVKAPAEKLRAQGVIV
YAIGVKNADAVELGEIAGDPKRTFFVNNFDALRPIKDDIITDICSQDACKDTPGDLLFLI
DSSGSIFPQDYEKMKEFMKSVIGKSVIGQNKLHVGVMQFSTVQQLAFPLNLYYSKEDMSK
AIDDMQQVGGGTLTGGAITDVSQYFDTTKGGRPDMRQRLIVITDGEAQDQVKGPAEALRA
KGVLVYAIGVVDANTTQLLEISGSPDRTYAERNFDALKDLESQVAMELCDPERECKKTER
ADIIFLVDGSTSITLSKFRSMQKFMASMVNQTTVGKDLTRFGVILYSNNPKSVFTLKTYN
SKREVLKAISALKSPYGDTYTGKALAYSLEFFNDAHGGRAGLQVPQILVVITDGDATDRN
SLVPPSVALQDKGISVFSIGVEGANRTQLEIMSGHDTSRVFYVDNFDALETLYKNITHVL
CNSTKPVCEKQQADLVFLIDQSGSISPNDYTTMKQFTTGLVNSFKVSETFVRVGLAQFSN
TFQKEFYLNKFYSEQAVTKHILDMEQLGGGTNIGVALDSIRKYFEASQGSRRSEGVSQNL
VLITDGESQDDVEDAADRLRALGIEVFAIGIGNVHDLELLQITGTPERLFTVQSFGSLEK
IKQKVVDTICKSKPIKDPSACSIDIVMGFDISRENRAPGEMLVSGHAKLEAFLPEIARYV
SSVQGLCCVGPEPVKTNIAYKVVAQDGRSIYDFNFEGYSKDVVNKVMTLNLAEPTYFNTD
LLKALRKKFSAQSQAGVKVLVIFSDGLDEDVMKLEQESELLRQSGVSALLIVALEGARDP
AQLQMVEFGRGFGYKLPLSIGMTSIGSTVLQQIDSVSDRECCNVMCKCSGHEGARGSRGP
PGSKGLSGQNGFPGFPGDEGLAGERGRPGPAGPQGVQGCSGLRGPKGYRGLRGNRGEQGE
FGLDGVDGEQGRTGKDGGRGSRGDPGNPGIPGIRGEAGLRGQRGLRGDPGEPGADNTRPG
AKGDPGNPGLPGTPGQDGRPGDSGAVGNPGPDGRRGALGEKGAPGGPGVLGLQGSLGASG
PQGTRGVRGQPGPRGVPGLPGPQGGPGSSGAPGSGGRRGANGQKGQPGDPGDKGVPGSKG
PRGMAGQDGKDGHGPAGPKGVRGDPGFPGYPGLLGEDGLQGPNGQPGRKGNRGRGGNSGR
PGESGVSGEPGYRGHKGPRGLPGGKGMTECQLITSIRDNCACSLGPSECPAFPTELVLGL
DMSEDVTPAAFERQRSVLLSLLENITVSESNCPTGARVAVVGYSAYTKYLIRFQDYHRKT
QLMESVKNIALERTSNRRQLGAAMRFVGQNVFKRVRAGMMMRKVAVFLSNGPSPDVNDIV
TAVMEYRALGIVPAVISLRNAPAVGRAMEVDDSGSSIFSVLGKDMSADLEKVKECAVCYD
PCRRSPQCAFIQEPLQPQEVDMDLVMVVDGSREMQADEYAGVQQLLGSVVEQLVVSPQPR
RAGNQARVAVVQQGGAQDTTLGFGFGTYQTSALMRKHLIRNMTQQGGSSVLGRTLEFTLK
EVLLKAGQPRRRRVLLTVVGTQTAHEDRAKLRYISQKAKCEGAVLFVVTVGDRYDRSQVE
ELASLPVQQHLIHIGSLKTDEQGYAQRFFRVFLSALNKGMNTYPPPAFKRTCDQLTEQSG
GQTFINGQGTAVVDEEEFREEEEERFQEQTGGQTETGQLDIVHSLTGGDEQRFISHSNDL
NLLPSPELASFVSKDRCLLGQDQGSCQNYTMMWFFDSQQKECARFWFGGCGGNENRFKTQ
DECKNLCVTKSR
NT seq
8139 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaggcggggtcttctcctcagcctcatcatggcagtgtgtttctactgcaac
accgctgagaaaacagtctgcactcaagaagctgtagccgacatcgtcttcatggtggat
gggtcgtggagcatcggcaccgaaaacttccaacagatccgtcagtttctgtccacgctg
gtcaacagcttcgatgttgggcctgagcaggtccgtatcgggctggttcagtacagcacc
actccacgcagcgagttcctgctcaacacctaccagagcaagaaggacatcctccaatac
atcagcagcttaccttacatgggaggcggcacccagacggggctcggcttggacttcatg
ctgaatgagcactttgtggagaaagccggaagccgagggggccagaatgtgccgcagatc
gctgtggtgatcactgacggcaaatcacaggacaacgtagagtcccacgctcaagacctg
aagagaaagggaattgttttgtatgcgattggtatcaaagatgcagatgaagaccagctg
acagagatagccaatgagcctcacagccagcacgtctacagcgtgtctgactttgcagca
ctgcaggggatctctcagagcattgtccagacgctctgcacaactgtagaggaagtcaaa
cgacaactcctgcaattgtctcaagaatgtgccaaagccacggtggccgacatcgtcttc
ctggtcgacggctcttccagcatcggcatcagtaactttcaggagatccggcagtttctc
cgtagcatagtcaacggcctggacatcggccctgacaaggttcggatcggcttggctcag
tacagcgatgaaactaccacagagttcctgctgaaggatcacatggacaagaattccctg
ctggctgcagtggaagccctttcctaccaaacaggaggcacggaaacaggcgaagccatc
acatacctccaaaataactatttcacagaggatgcggggagccgagccagccaacgggtg
cctcagatcgctgtggtcatcacagatggagactccacggacgatgtgaatgcgcctgcc
aaaagcctgaggcagcacggagtcatcgtgtttggcatcggggtgggagaagctaaccgg
aaggagctggagtccatcgctaaccggcctccagatcgcttcttgtcctccattgctaac
taccaggctctgaagatgctgaaagatcgtctgctgcacactgtttgcatctctgtggag
gaccagaggcaagccttggcagaaaggtttgcagacatcttcttcctggtggacagtggc
atgtctccaacagacttccagcaggtcaggaccctcctaacccgactggtcaatcagcta
aacattggagcatccgcctaccgtctgggcttggcccagtacggtccggatatcagggtt
gaatttcttctcaatgccctccaaaccaaagaggatactcagaccgctgtcaagcgtttc
cgccagcgaagactgcaacccaacgagcctcgtaaactgggcagcgctttggagtttgcc
agcacaaaccttttcaccactgaggcagggagccgggcggaccaaggctaccgacagttc
ctggttgttatcagtggaaaagaatctgatgatcccgtgtatagggagtcacgtctgatc
aaatcctcaggagttactgtggtgggcatgagtgttggtgcatccatgcaggagatgcgc
ctcgttgcgactgcaccgtacatctacgagtccatcaccaatgtacccgcactcagggct
atctttgaaagagaggagctggagaccattctcactggagattgcaaagcagccaaattg
gccgacatcgtgttcatcgttgatgagtctggaagcattgggacccccaacttccagctg
gtgcggactttcctccactcggttgtgagcggcctggaagtcagtccctctcgagtccga
gtgggcatcgttacgtacaacgagaagtccacagcacaggtttacctgaacaccttcaat
gacaagaaggagttgctgaagttcatcaagatcctgccttatcgtggaggtggtacgaac
actggagaggccttaaagtatgccctgaaagaggtttttatcccacaaagaggaagcagg
agagcaaagggtgtccagcaggtggcggtggtgatcacagacggtgaatcgcaagacaac
gtgagcacagcagcagctaatcttcgtcgagatggtatcaccgtttacgcagtaggggtc
aaagatgccaacgatgcccagctggtggagatggcgtcttatccatcccataagcacaag
tttattgtggacagttttgccaaactgaaatcactagagcagagcttgcagaaaatcctc
tgccataacatccttcggcaagcagtctcaatcagtacaagaagaactggcatcaaagaa
ggctgtgtacaaacggatgaagctgacatcttcttcctgattgatcactcaggaagcatt
taccccaaagactttaaagacatgaagatgttcattactgagtttctacataccttccgt
attgggccacaacatgtccgcatgggggttgtaaaatacgcagattcggcagatttagaa
tttgatctgacagagtacgccaatgcaaagacattggagaaagccgtagagggaattagg
caaataggaggtgggacagagacgggaagagctctggaattcatgggcccgcactttgat
agagccatggtaactcgtggacacaaagtcccggagtacctggtggtcatcaccgatgga
aaatcctcagatgaggtcaaggctcccgcagaaaagctgagggcgcagggcgtcatcgtc
tatgccattggggtgaaaaatgcagatgctgttgagctgggagagattgccggtgacccc
aagaggactttctttgtcaataattttgatgctttgaggcccatcaaggacgacatcatc
acagacatctgttctcaagacgcttgtaaagacacaccaggcgacctccttttcttgatt
gacagttctgggagcatatttccacaagactacgagaaaatgaaagaattcatgaaatct
gtcatcggcaagtccgtcatcgggcagaacaagctgcacgttggtgtcatgcagttcagc
actgtccaacaactagccttccccctcaacctctactacagcaaggaagacatgtccaaa
gccatcgatgacatgcagcaggttggtggcggcacactcacaggtggagccattactgat
gtgtcgcagtactttgatacaaccaaaggagggcgtcctgacatgaggcagaggctgata
gtgataacagacggtgaggcccaagaccaggtcaaaggcccagccgaggctctgagggcc
aagggagtgttggtctacgccatcggagtggtggacgccaacaccacccagctgctggag
attagcggttcaccagacaggacttatgctgagaggaactttgatgctctgaaggacttg
gagagtcaggtcgccatggagctctgtgatccagagagagagtgtaagaagacagaaaga
gctgacattattttcctggttgacggctccacaagcataaccctgagcaagttcagaagc
atgcagaagtttatggcgtcaatggtgaaccaaaccactgttggcaaggacctgactcgc
ttcggggtaattctttactccaacaaccccaaatctgtttttactctgaaaacgtacaac
tccaaacgagaggttcttaaagcaatatcagcactgaagtccccatatggagacacctac
actggcaaggctttggcatactctttagagttcttcaacgatgcacatggtggtcgggcg
ggtcttcaggtgccacagattcttgtggtgatcacagatggtgacgctactgaccgtaac
agtctggtccctccatctgtggcactgcaagacaaagggatcagtgtcttcagtatcgga
gttgaaggagccaacaggacacagctggagatcatgtctggtcacgacacgtccagagtt
ttctatgtggataactttgatgccctggaaacgctgtacaagaatattactcatgtcctc
tgcaattccaccaagccagtttgtgagaaacagcaggctgacctggtcttcctcatcgat
cagtctggcagcatcagcccaaatgactacaccaccatgaagcagttcaccacaggactg
gtgaacagctttaaagtcagtgaaacttttgtgcgtgtaggacttgcccagttcagcaac
actttccagaaagagttttacctcaacaagttttacagcgagcaagctgtgaccaagcac
atcttggacatggagcagctcggaggaggcaccaacattggcgtggccctggactccatc
aggaaatattttgaggcgtcacagggcagccgaagatctgaaggggtctcacagaatctg
gtgctgatcacagatggtgaatcgcaggatgacgttgaggatgcagcagaccgtctcagg
gctctagggatcgaggtttttgccatcggcattggaaacgtccacgatctagagctcctg
cagatcactggcactccagagaggttgtttactgtgcagagcttcggcagcttggaaaag
atcaaacaaaaggtggtggatacgatctgcaaatctaaacccatcaaagatcccagtgcc
tgcagcattgatatcgtcatgggattcgatatttctcgggaaaacagagctcctggcgag
atgctggtcagcggccacgccaagctcgaggctttcctgccagagatcgcccgttacgtt
tcttcagttcaaggtctgtgctgcgtcggtccagaacctgtgaagaccaacatcgcctat
aaagtggtggcacaagatggacgctccatctacgacttcaactttgaaggctacagcaaa
gacgtggtgaataaagtcatgaccttgaatttggcagagcccacttacttcaacactgac
ctgctgaaggccttaaggaagaagttcagtgcccagtcccaagctggcgtgaaggtgctg
gtgatcttctcagacggactcgatgaggacgtgatgaaactggagcaggaatcagagctt
ctgcgacagtctggggtcagcgctctgctgatagtggccctggaaggggcccgagacccc
gcccagctgcagatggtggagtttggacgaggattcggctacaagcttcctctcagcatt
ggcatgacaagcatcggcagcaccgtcctccagcagatcgactcagtgtcagacagggag
tgctgcaacgtcatgtgcaaatgttcaggacatgaaggcgcccgaggctctcggggcccc
ccggggtcaaagggtttgtctggacagaacgggttccccgggttccccggagacgaaggc
ctcgctggggagcgtggccgtcctggaccggctggacctcagggggtccagggttgttct
gggctcagaggaccgaagggctaccgaggactccgtggtaacaggggagaacaaggagag
tttgggctggacggggtcgatggagaacagggacggacgggaaaagatggaggtcgagga
tcaagaggagacccaggaaacccaggcatcccggggatccgaggggaggcgggtctgaga
ggacagcgaggactccgaggagatccgggggaaccaggtgctgataacaccagaccagga
gccaaaggagacccggggaacccaggcttaccggggacacctggacaagacggccggcca
ggggacagtggagcggtaggaaacccgggtccagatggaagaagaggcgcgctcggtgag
aagggggcacctggaggaccaggagttttaggactccagggcagcctcggtgcttcaggt
cctcagggtaccagaggggtcagaggtcaacctgggccaagaggggtccctggacttcct
ggacctcagggaggaccaggatcaagtggagcgccgggatcaggcggacgacgtggagct
aatggacagaagggccaaccaggggatccaggggataaaggtgttccaggctcaaaggga
cccagaggaatggcgggtcaggacggcaaggacggtcatggacctgcaggacctaaagga
gttcggggagatcctggtttccccgggtacccaggtctactgggtgaggacggcctgcag
ggaccgaatggacaaccgggacgcaaagggaaccgaggacgaggcggaaactcaggcagg
ccaggagaatcaggcgtgtcaggagaaccaggatatcgaggtcacaagggccccagaggt
ctccctggaggaaaaggcatgactgagtgtcagctgatcacctccatcagagacaactgt
gcgtgttccctgggtccgtcagagtgtccggccttccccaccgagctggtgttgggtctg
gacatgtcggaggacgtgaccccggcggccttcgagaggcaacgctccgtcctcctgtcc
ctgctggagaacatcaccgtctccgagagcaactgtccgacgggcgctcgtgtcgcggtg
gtgggttacagcgcctacaccaagtacctgatccgcttccaggactaccaccgcaagact
cagctgatggagtctgtaaagaacatcgccctggagaggacgtccaaccggcgccagctg
ggggccgccatgcgcttcgtgggtcagaacgtcttcaagcgcgtccgagcaggaatgatg
atgaggaaggtggctgtcttcctctctaacgggccgtcaccggatgttaacgacatcgtc
accgccgtgatggagtaccgggcactcggcatcgtcccggcggtcatctctctgaggaac
gctccggctgttggtcgagccatggaggtcgacgactcaggaagttccatcttcagcgtt
cttgggaaagacatgtctgctgacctggagaaggtcaaggagtgtgcagtctgttacgac
ccctgccggcgttcgccgcagtgcgccttcatccaggaaccactgcagcctcaggaggtt
gacatggacctggtgatggtggtggacggctccagggagatgcaggctgacgagtacgcc
ggcgtccagcagctgcttggctcggtagtggaacagctggtcgtgagcccgcagccccgc
agggccggcaaccaggcccgggtggccgtggtccaacagggcggcgcgcaggataccacg
ctagggtttggcttcgggacctaccagaccagcgccctgatgaggaagcacctgatccgg
aacatgacgcagcagggaggctcgtcggtgctgggacggactctggagttcaccctgaag
gaggtgctgctgaaggccggccagccccggaggaggagggtgctgctgaccgtggtgggc
acccagactgctcacgaggaccgagccaagctgcgctacatctcccagaaggccaagtgt
gagggggcggtgctgttcgtggtgacggtcggagatcgctacgaccggtcgcaggtggag
gagctggctagtctgcctgttcagcagcacctgatccacattgggagtctgaagactgac
gagcagggctacgcccaacgcttcttcagagtcttcctctccgccctcaacaagggaatg
aacacgtatcctcctcctgctttcaaacggacatgtgaccagctgacagaacaatccgga
ggacaaacattcataaacggtcaggggacggcagtggtggatgaggaagagttcagggag
gaagaggaggagaggttccaggaacagacgggaggacagactgagaccggccagctggac
atcgtccacagtctgaccggaggagacgagcagagattcatctcccactctaacgatcta
aacctgctgccgagtcccgagctggccagcttcgtctccaaagaccgctgtctcctcggc
caggaccagggcagctgccagaactacaccatgatgtggttcttcgacagccagcagaag
gaatgcgctcgtttctggttcggcggctgcggtggcaacgagaaccgcttcaagacgcaa
gacgagtgcaagaacctgtgtgtgacgaagagccgatga
DBGET
integrated database retrieval system
