Columba livia (rock pigeon): 106146053
Help
Entry
106146053 CDS
T02912
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
clv
Columba livia (rock pigeon)
Pathway
clv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
clv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106146053
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
clv00536
]
106146053
Glycosaminoglycan binding proteins [BR:
clv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106146053
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
106146053
NCBI-ProteinID:
XP_021138880
LinkDB
All DBs
Position
Unknown
AA seq
1726 aa
AA seq
DB search
MTIPCPAKLPHEVDLLDKITSHAQDLSNISFSYDEANCSVLEIGQYATLNIPTREAFGDR
FADELSVLMKLRYFLKEDTSLVTILSHRSHVLFQIRINPYALVFVTTRRRHYEFPVSLLG
DGHWHQVALSISLERLELHVDCRLVDRVSWSNYFGMGVNTDGLIIIGGLIESFEIPFKGA
LQQLTFVMGDPAAAGEHCRSYNAACINSFNLNRSGYLWELPPSWPEVPKETNEIQDSSAQ
DSRLTDSGLTLGPPWTWENTQETLNFQPDGSDLTSPSATEMLSAEEEEDDSLSIEDEGFE
LLNSTYNKITGPGRPGLGRSIPRVTGSSGPSMKMHKAAKKERASEPWEENVTTEKLRGDT
GAWQQLLPSKPGDDITDLDVPTTFTKVSPSARQAATPKGDVLQGPLGTGSTAGVLEQPLV
ATNPDVPGPVDGAAHPGQPISPVGHGQQGHIKPGPPGLPGPPGLPGCPGRRGLVGPKGDK
GYPGAMGRMGPPGDPGPMGIPGVPTVVLWRNSREDWQTFTQSSFYQLLHAGWPRKPGAPG
PPGHPGKTGAPGPSGDPGEAGEKGQRGYMGEPGLQGLPGRAGYPGSDGFPGLDGKPGPWG
LPGEQGPQGFQGDQGMAGEKGEEGFLGDPGAAGDKGEKGAKGVKGENGLPGPAGLHGMSG
LKGVMGFQGPVGPEGEGGSVGAPGPVGPMGEPGQPGAVGCPGVNGSQGEMGPPGSPGPRG
PQGPQGLQGRRGPPGPRGVQGPAGMEGSAGPKGDTGTDGVPGLRGQLGQEGPGGFIGLPG
SKGTQGEQGCRGPGGSKGDLGTKGDKGPCGAQGAEGPPGIRGQVGSQGFPGPRGAAGPRG
PEGQEGQMGLAGLNNSEGPKGGRGPDGPKGTPGPRGARGRVGQRGLVGDPGLPGLQGIPG
AEGAAGKPGTQGLPGTTGNPGRRGPPGFAGSQGARGHTGPPGSIGSPGKPGSDGDPGSLG
PKGLPGKPGLEGLQGPVGTYGYPGLAGDRGRPGRRGDKGERGAQGPPGFPGKAGPKALPG
PPGPRGAPGSQGRAGDPGPRGLPGLPGVPGPRGLDGVPGKPGSAGEMGAPGVAGAAGLPG
YPGREGPNGPEGPSGMRGEKGDTGHPGEAGVSGLDGEQGPPGPPGAEGHPGPKGEQGEAG
TCGAPGVSGDPGEPGDDGPEGPPGRPGERGKEGDTGDAGDPGELGPQGQKGDTGPRGLPG
APGPGAAAGEIGEKGHKGEKGQEGLLGQVGVTGAAGSAGARGWFGVTGLRGPPGHDGPEG
VKGDPGPRGMNGPAGAAGFEGLAGDDGVKGDSGKPGLVGAAGPQGRAGVPGLQGHTGHQG
VRGVAGGKGDPGQQGPLGPPGEAGAMGPSGTEGMAGAKGEPGKPGKPGQMGSPGQAGLKG
WKGRKGEKGDVGREGEEGAPGEAGRRGKRGRVGHRPPRGPRGPKGYPGDKGPEGPQGPQG
LYGIPGLKGMKGDPGPKGHKGEKGSGGDPGQQGDDGFKGKPGPHGVPGRPGPKGQQGDSG
RPGPRGHPGIPGTPGLSGPKGLKGFPGLPGPQGTPGLPGLAGSPGPRGPTVMLSGEELRH
LIYPSSHLNYTAVWALLDTLSQELQALIEHPNGTKTNPAATCKELLLAHPSLPDGQYYID
PNQGSPQDALVAFCNFTAGGETCIAPVHNQVPIKAWLSTYTSKDTFEWFSTLPGGFLLDN
DSFITDTIFQFSTEELSLLPLRDLAVFHNGDASHQFGFTVGPVCFS
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgaccataccctgcccagcaaaacttccacatgaagtggacttgctggacaaaattact
tcccatgcgcaggacctcagcaatatttccttcagctatgatgaagccaactgcagcgtc
ctggagatcgggcagtatgcgaccctcaacatcccgaccagggaggcgtttggggacagg
tttgcagatgagctgagtgtgctgatgaagctcaggtacttcctgaaggaggacactagc
ctggtgaccatccttagccaccggagccacgtgctattccagatcaggattaacccctac
gccttggtctttgtcaccaccagaaggagacactatgagttcccagtttcccttctcggc
gacgggcactggcaccaagttgctctcagcatctccttggagaggctggagctgcacgtg
gactgtcgactggtggacagagtgagctggtccaactacttcgggatgggagtgaacact
gacgggctgatcatcatcgggggcctgattgagtcctttgagatcccctttaagggtgct
ctacagcaactgacttttgtgatgggagacccagcagccgccggcgagcactgccgcagc
tacaatgcagcatgcataaactccttcaacctcaaccgctccggttacctgtgggagctt
ccaccatcctggccagaggtgccaaaagaaaccaatgaaatccaggactcatctgctcag
gactccagactcactgattcaggtttgaccctgggaccaccttggacatgggagaacacc
caggagaccctcaacttccagcctgatgggagcgacctcacttcaccctctgccactgag
atgctgtcagctgaggaggaggaggacgacagcctctctattgaggatgaagggtttgag
ctgttgaactccacctataataaaatcaccggccccggcaggccagggcttggcaggagc
atcccgcgggtcactggtagttctggaccctccatgaaaatgcacaaagcagccaagaag
gagcgtgcctccgagccctgggaagagaacgtcaccacggagaagctaaggggtgacacg
ggcgcctggcagcagctcttgcccagcaaacccggtgatgacatcaccgacctggatgtg
ccgaccaccttcaccaaggtctccccatcagcacgtcaggcagccacccccaaaggagat
gtgcttcaaggtcccctggggacggggtccacggcaggtgtcctggagcaacctctggta
gcaaccaaccctgatgtcccagggcctgtggacggtgctgcccacccaggacagcccatc
tcaccggtgggacacgggcagcagggtcacattaagccgggaccaccagggctgccagga
ccaccagggctgccgggctgtcctgggagacgtggactggtgggacccaaaggagacaaa
gggtaccctggagccatggggcggatgggccccccaggagaccctggccctatgggcatc
cctggtgtccccaccgttgtcctctggaggaactccagagaggactggcagacgttcacg
caatcgtcattttaccagcttctgcacgcgggctggccgagaaaacccggagcccctggg
cccccaggacatccagggaaaacaggagcacctggacccagtggagatccaggggaagca
ggcgagaagggccaacgggggtacatgggtgagcccgggctgcagggcttgccgggacgt
gcgggttatcccggctcggacggtttccctggcctggacggcaaacctggcccgtggggg
ctgccgggagagcagggaccacaaggcttccagggtgaccagggaatggctggtgagaag
ggagaagagggttttttgggagaccctggagcagctggggacaaaggagagaagggagcg
aagggagtgaagggagaaaatggcctgccgggtcctgctgggcttcacgggatgtcgggt
ctgaagggtgtgatgggcttccagggccccgtggggccggagggagaaggtggctcagtg
ggtgccccaggtcctgttggccccatgggggagccaggccagccgggagcagtggggtgc
ccaggtgtcaatggctctcagggagaaatgggtccccccggctcacctggcccacggggc
ccccagggaccgcagggcttgcagggcagacgtggcccccctggccccaggggtgtgcag
ggtccagctgggatggagggatcagctggtcccaaaggagacaccggcacagacggtgtc
cccgggttgaggggacagctgggacaggagggccctggggggtttattgggctgccaggt
tcaaaaggcacccaaggagagcagggctgtcgaggtccaggtggatccaagggagacctg
ggaaccaaaggagacaagggtccctgcggagcacagggagctgaaggaccccctgggatt
cggggccaggtcggctcacagggctttcccggcccccgcggtgcagcaggaccccgggga
ccagaggggcaggaaggccagatgggcctggcagggctgaacaacagcgagggacccaag
ggaggccgaggacctgatggcccaaagggaactccaggaccacggggagcccggggccgc
gtgggtcagcgtgggctggtcggagaccccgggctgcccggcttgcagggcatcccagga
gcagaaggcgcagcaggaaagcctggtacccagggtctcccaggaaccacaggcaaccca
ggcaggaggggaccaccgggttttgctggctcgcagggggctcgtggacacacaggacct
cctggatcaataggttccccgggaaaacctggctctgacggagacccgggttccctgggc
ccaaaggggctgcccgggaaacctggcttggaggggctgcagggacctgttggcacctac
ggctacccaggacttgctggtgaccgcggcaggccggggcgcaggggagacaagggggag
aggggagcccaaggcccaccgggatttccaggaaaagctggtcccaaggccctgccaggt
ccccctggtccacgaggtgctcccggctcccagggcagagcaggagacccaggtcctcga
gggcttccagggctgccgggtgtccctggcccacgggggctggatggtgtccctgggaaa
cctggctcagcaggagaaatgggggctcctggagtggctggtgctgctggcctgcctggg
tacccgggacgggaaggtccaaatggacctgaaggaccttcagggatgagaggagagaag
ggtgacacgggacatcctggggaagcgggtgtcagcgggctggatggcgagcagggacca
ccaggaccaccaggagccgagggtcacccgggacctaaaggcgagcagggagaggcagga
acctgcggagctccaggcgttagtggggatcctggagagccgggagacgatggcccagag
gggccaccagggaggcccggggagcgagggaaggagggtgacaccggtgatgctggagac
ccgggtgagctaggaccacagggacagaagggtgacactggccccaggggtcttcctgga
gcacctggtccaggagctgctgcgggagaaattggagaaaaaggccacaaaggagagaag
ggccaggaaggtttgctgggccaggtcggtgtcaccggagctgcgggatccgctggagcc
agaggatggtttggtgtgactggtctccgaggtcctcctgggcacgacggtcccgaggga
gtgaagggagatccagggccacgaggcatgaacggacctgctggtgctgctggattcgag
ggactcgctggagatgatggagtcaagggagacagcggcaagcctggtctggtgggtgca
gcaggtccccagggacgggccggtgtccctgggctccaggggcacactgggcatcaagga
gtgagaggagtagcgggtggcaagggggatccaggccagcagggtcctcttgggccaccg
ggtgaagctggagccatggggccgagtggcactgagggcatggcaggtgcgaaaggggag
ccgggcaagccaggaaaaccagggcaaatggggtctccgggacaagccggtctgaaaggg
tggaaaggtcgcaaaggagaaaagggcgatgtgggacgtgaaggggaagaaggggcccct
ggagaagctggcagacggggcaagcgaggcagggtgggccaccggcccccgagaggtccc
cggggacccaagggctacccaggtgacaaggggccagaaggacctcagggcccccaagga
ctctatggcatcccggggctgaagggcatgaaaggagaccctggtcccaaaggacacaag
ggcgagaagggtagtgggggtgacccaggccagcaaggagatgatggcttcaagggcaag
ccaggaccccatggtgtcccagggaggccaggacccaagggacagcagggtgacagtggc
cgccctggcccacggggacaccctggcatccctgggacaccgggcttatctggacccaaa
gggctgaaaggctttccagggctgccaggaccccaaggcacaccaggcctgccgggtctg
gccggctcccctggtccccgcggacccacagtgatgctgtctggggaggagctgcggcac
ctaatttatccatccagccacctgaattacactgcggtctgggctctgctggacacccta
agccaggagctgcaagccctcatagagcatcccaatggcaccaaaaccaaccctgcagcc
acctgcaaggagctgctgctggctcatcccagcctgcctgacgggcaatactacattgac
cccaaccagggcagcccccaggacgcgttggtggccttctgcaacttcacagcgggcggt
gagacctgcatagcccccgtccacaaccaggtccccatcaaggcttggctgagcacctac
acctctaaggacacctttgagtggttcagcaccctgcccgggggcttcctgctggacaat
gactccttcatcaccgacaccatcttccagttcagcacggaggagctctccctgctgccc
ctgcgggacctggccgtcttccacaacggcgacgcctcccaccagtttggtttcacagtt
ggaccagtttgcttcagctga
DBGET
integrated database retrieval system
