Cupriavidus necator N-1: CNE_1c22590
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Entry
CNE_1c22590 CDS
T01564
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cnc
Cupriavidus necator N-1
Pathway
cnc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNE_1c22590 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnc03019
]
CNE_1c22590 (rnr)
03016 Transfer RNA biogenesis [BR:
cnc03016
]
CNE_1c22590 (rnr)
Enzymes [BR:
cnc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CNE_1c22590 (rnr)
Messenger RNA biogenesis [BR:
cnc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNE_1c22590 (rnr)
Transfer RNA biogenesis [BR:
cnc03016
]
Prokaryotic type
tRNA degradation factors
CNE_1c22590 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
S1_2
CSD
HTH_12
Motif
Other DBs
NCBI-ProteinID:
AEI77593
UniProt:
G0F0G4
LinkDB
All DBs
Position
1:complement(2336749..2339376)
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AA seq
875 aa
AA seq
DB search
MSNSFQKKLNQNNYPIPSREEILGVLRTSGSPQSAGDIAKALSVTRKEHDGFQKRLAAME
RDGQIELNRKGRYELAHQPNFVTGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDR
AQVRVVGYDRRGRPEGQIVEIIERANRFVIGRLLSEGGVLVVAPEDKRISQDILIPPKAQ
GKARVGQVVSVELIEFPDRYVQPVGRVVEVLGDIDDPGMEIEIAVRKYGVPHAFAPAAAQ
EAAALPDEVRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRAKGWRLIVAIA
DVSHYVRPGTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPLVDRLCMVCDAVIT
AKGELKGYQFYPAVMHSAARLTYNEVWSVLSNTKGPEAHKRSELVPHLQNLYELFQVLLK
ARRARGAIDFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKH
PALYRIHAGPSEEKLKNLRDFLRTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTML
LRSMQQAVYSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRAIKAVLAHTKYQPAFAHGT
ELNTAISPKARRLQAKDAEQKAELTAARAKRNEAIWDELGLHCSANERRADEASRDVEAW
LKCYFMRDKLGSDYAGTISAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRG
ERTGIRYRLTDRVRVQVSRVDLDARKIDFRLVQEPSAKTLRARAGGTETQPRVPAAHAVP
ARKKGRQLAALLGGSSKPEESFDETLDRVIEEQPVFEAVITPLRPHVKTGGKPAKHAAKP
KPSHLEKPRKPASKSHQAKPAGKTPAKSPRTPRKR
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaatagtttccagaaaaaattgaatcagaacaactatccgatccccagccgggaa
gaaatcctgggcgtgttgagaacgtcgggatccccccagtcggccggcgatattgccaag
gccctctccgtcacgcgcaaagagcatgacggttttcagaagcgcctggcggccatggag
cgcgacggccagatcgagctgaaccgcaagggccgctatgaactggcccatcagccgaac
ttcgtcaccggccgggtgcagggccaccgcgacggctttggcttcctgatccgcgacgac
ggcgaagacgacatcttcctgcccgagcgcgaactgcagaaggccatgcacaacgaccgc
gcgcaggtgcgcgtggtcggctacgaccggcgcgggcgccccgaagggcagatcgtcgag
atcatcgagcgcgccaaccgttttgtcatcggccgtctgctcagtgaaggcggcgtgctg
gtggtggcgcctgaagacaagcgcatcagccaggacatcctgatcccgcccaaggcgcag
ggcaaggcacgggtggggcaggtggtcagcgtcgagctgatcgaattccccgaccgctac
gtgcagccggtgggccgcgtggtggaggtgctaggggacatcgacgatcccggcatggag
atcgagatcgccgtgcgcaagtacggcgtgccgcatgcgttcgcgccggccgccgcccag
gaagccgccgcgctgcccgacgaggtgcgccaggccgacctggaccaccgcatcgacctg
cgcgacatcccgctggtgaccatcgacggcgaagacgcacgcgacttcgacgatgcggtc
tattgcgagccggtcaagatcggtcgcgccaagggctggcgcctgatcgtggcgatcgcc
gatgtgtcgcactatgtgcgccccggcacgccgctggacgcggatgcgctggaccgggcc
acctcggtctacttcccgcgccgcgtgatcccgatgctgccggagaagctgtccaatggg
ctgtgctcgctcaatccgctcgtggaccggctgtgcatggtgtgcgatgccgtgatcacc
gccaagggcgaactcaagggctatcagttctacccggccgtgatgcattcggccgcgcgc
ctgacctacaacgaggtctggtcggtgctgtccaacaccaagggacccgaggcgcacaag
cgcagcgagctggtgccgcacctgcagaacctgtatgagctgttccaggtcctgctcaag
gcacggcgcgcgcgcggcgcgatcgacttcgacaccaccgagacctatatcgtctgcaac
gcgcagggcaagatcgagcagatcctgccgcgcacgcgcaacgacgcgcaccggctgatc
gaagagtgcatgctgaccgccaacgtatgcgcggccgacttcctcgaacgcttcaagcac
ccggcgctgtaccgcatccacgcgggccccagcgaagagaagctgaagaacctgcgcgac
ttcctgcgcaccgccggcctgtcgctgggcggcggcgacaagccgcaggcatcggactac
gccgaggtgatggacaagatcaagtcccgtcccgacgcgccgatgctgcagaccatgctg
ctgcgctcgatgcagcaggcggtctacagcccggacaatatcggccacttcggcctggcg
tacgaggcctacgcgcacttcaccagcccgattcgccgctaccccgacctgctggtgcac
cgcgcgatcaaggcggtgctggcgcataccaagtaccagccggcgtttgcgcacgggacc
gagctgaataccgcgatctcgcccaaggcgcgccggctgcaggccaaggacgccgagcag
aaggcagaactgaccgcggcgcgcgccaagcgcaacgaggccatctgggacgagctcggc
ctgcactgctcggcaaatgagcgccgcgcggacgaggcttcgcgcgatgtcgaggcctgg
ctcaagtgctacttcatgcgcgacaagctaggcagcgactacgccggcaccatcagcgcc
gtgacctcgttcggcatcttcgtgcagctcgacgagctgtatgtggaaggcctggtccac
gtgaccgagctgggcagcgactacttccagtacgacgaggcccgcaacgaactgcgcggc
gagcgcaccggcatccgctaccgcctgaccgaccgcgtgcgcgtgcaggtctcgcgcgtg
gacctggatgcgcgcaagatcgacttccgcctggtgcaggagccgtcggcgaaaaccctg
cgcgcccgcgcggggggcaccgagacccagccgcgcgtgcctgccgcccatgcggtgccg
gcacgcaagaagggacgccagctggcggcgctgctgggcggctcgtccaagccggaagag
tcgttcgacgagacgctggaccgcgtgatcgaggagcagccggtgttcgaggcggtgatc
acgccgctcaggccgcatgtgaagaccggcggcaagccggccaagcacgcggccaagccc
aagccctcgcacctggagaagccgcgcaagccggcctccaagtcgcaccaggccaagccg
gcgggcaagacgccggccaagagcccgcgcaccccgcgcaagcgctga
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