Cryptococcus neoformans var. neoformans JEC21: CNH00940
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Entry
CNH00940 CDS
T00243
Name
(RefSeq) transcription initiation factor tfiid 90 kda subunit (tafii-90), putative
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cne
Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cne00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CNH00940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cne03021
]
CNH00940
03036 Chromosome and associated proteins [BR:
cne03036
]
CNH00940
Transcription machinery [BR:
cne03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
CNH00940
Coactivators
SAGA/TFTC/STAGA complex
CNH00940
Chromosome and associated proteins [BR:
cne03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
CNH00940
STAGA complex
CNH00940
TFTC complex
CNH00940
SAGA complex
CNH00940
SLIK complex
CNH00940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
TFIID_NTD2
ANAPC4_WD40
NBCH_WD40
CTLH
Nbas_N
LisH
Motif
Other DBs
NCBI-GeneID:
3259280
NCBI-ProteinID:
XP_024513324
LinkDB
All DBs
Position
8:complement(join(916337..916472,916558..917006,917078..918030,918082..918248,918302..918425,918469..918547,918605..919210))
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AA seq
837 aa
AA seq
DB search
MSQSPDPSSVKGGAQGQLAPKSSTPTQQPPLTDSKLLRQFVMEYLQSHGFDKALEKLTEQ
VEDANLSTTASAAVLGDADVSKEVADGKATAGEQGGEKEAIFRAPGPVPLESNIKRNIPQ
AQAVSASTMSDRITPEFEAQAKYIIEQLQKKVEAVQEEGGDEKEKELRDGIPVDGAMVDV
SDKVAGYEAYRRWVDGGLDVWKAELDNLSFPLFVLSFLDMIHSGFLKTAREFFEKHSAHH
RELHSQDLSSLSSVSTEEHIKRNPFCARILSEKYVVPLSRNAYDLLLQWLSGASLDDEWE
AGLHSAPGRQKEAIKLIVVSHLNITVTNDSAPLDKVTIASKSGLISSSLPPNTNIDAFNT
ATQLKLGPPPMTEKLKEQVTRTLQDEGEAQGANGDANGDIDMTSPFPTNEPVIKLEPETE
RDPSVISPDESETLPPIPAVFRIADLKREVEAIKDKRKMIRLGPSGSGASAGSGVLPSVV
AFTLFDHGENANSVEFSRDSSLMAVGSSESCVRLWSLKGDKLKKKKVDIEGNLVEDEGLP
MRKLVGHSGPVYSLSFDPLYGSAGPPSTLLSSSQDGSIRLWSMDTYSNLVVYRGHGKDPV
WDVEWGPMGVYFASASRDRTARLWSSDRVAPLRMYTGHLSDVNCVKFHPNSLYLATASTD
TSCRLWDVQRGACVRLFLGHTDSVTTLSISPDGKTLASAGLDSSIWLWDLGSARPIKKME
GHTGAVTSLTFSAESSVLVSGGLDGTVRCWDVKSAGGERSVDGMFGGGDARRGEERGGLP
MNPGDVWDTAPHTPDLLATWPTKRTPILKTHYTPRNLCMVAGSFVPPSNHRTSGGEK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtccccagacccatcctccgtcaagggtggcgcccaagggcagctagctccc
aaatcatccacacccacccaacaacctcctctcacagactcaaagctcctccgccaattc
gtcatggaatacctccaatctcatggtttcgacaaggctctcgaaaagctcactgaacag
gtggaagatgcgaatttgagtacaactgcgagcgcggctgtcttgggtgatgcagatgtc
tccaaagaagttgcggatgggaaggcaacggcaggtgaacaaggcggagaaaaagaagcc
attttccgagctcccggtcctgtaccgttagaatccaacatcaaacgtaacattccccag
gcccaagctgtttctgcatctacgatgtctgatcggattactcccgaattcgaggcccaa
gcaaaatacattattgagcagcttcagaaaaaggtcgaggccgtccaagaggagggtgga
gatgagaaggagaaggagctgagagatgggataccggttgatggggcgatggtggatgtc
agtgacaaagtggctgggtatgaggcttataggagatgggtagatggaggattggatgtt
tggaaggctgaactggacaatctgtcatttccgcttttcgtcctctcgtttttggacatg
atacattctggtttcctcaagacagctcgtgaattcttcgaaaaacacagtgcccatcat
cgcgaacttcattcccaggatctttcctcattatcatcagtatcaactgaagaacacata
aagcgaaatcctttctgtgctagaatactgagcgaaaaatacgttgttcctttatctcgc
aacgcttatgatttacttttacaatggctatccggagcgagcttggatgatgaatgggaa
gctggtctccacagcgccccgggcagacaaaaagaggcaatcaagttgatagtggttagc
catttgaacataactgttaccaacgattctgcgcctctcgataaagtcacaatagcctct
aaatccggtcttatctcatcttctctcccacccaacaccaacattgatgctttcaacact
gccacccaactgaagctcggtccaccgccaatgacagaaaagctaaaagagcaagttacg
aggacgctgcaggatgaaggggaggcacaaggtgccaacggcgacgcaaacggcgatatt
gacatgacttcacccttcccgactaacgaacctgttatcaaactcgagcccgagactgaa
cgtgacccctctgtgatcagccctgacgaatccgaaacgctgccgcctatccctgctgtc
tttcgcatagcagacctcaagcgggaagtggaagcgatcaaagataaacgcaagatgatc
cgccttggtccttctggatcaggagcatcagctggatccggcgtcttaccgagtgtggta
gcgtttacgctgtttgaccatggtgaaaatgccaactcggtagaattctcgagggatagc
agtttgatggctgttgggagctcggagagctgtgtgagactttggagtttgaaaggagac
aagttgaagaagaagaaggtggatatagaagggaacttggtggaagacgaagggttgccg
atgaggaaactcgttggccattctgggccagtctattccctttcctttgatcccttgtat
ggctctgctggtccaccttccacgcttttatcttcttcacaagatgggtctatccgactt
tggtccatggatacgtactcaaacttggtagtttacagagggcacggtaaagatcctgtt
tgggatgtggagtggggtcctatgggcgtgtattttgcgagcgccagtagggatcggacg
gcgaggttatggagttcagacagggttgcgccgttgagaatgtacactgggcatttatca
gacgtgaactgcgtcaaattccatcccaattcgctttaccttgccacagcgtccaccgac
acctcttgtcgattatgggacgtccaacgcggtgcatgcgtccgtctcttcctcggacat
accgatagcgtcacaacgctctccatttccccggacggcaagacgctcgcgtcggcaggg
ctggactcgtccatctggctctgggacttgggctccgcccgaccgatcaagaagatggag
ggtcatactggcgcggtgacgagtctaactttctccgctgagagttccgtcctggtttcc
gggggtctggatgggacggtgaggtgttgggatgtgaagagtgcaggaggggagaggagt
gtggatgggatgtttggtggtggggatgcgagaagaggcgaggagaggggtgggttaccg
atgaatccgggtgatgtttgggatactgcgcctcatacaccggacctactcgcaacgtgg
ccaacaaaacgaacgcccattctcaaaacacattatacccctcgaaatttgtgcatggta
gccgggagttttgttccacctagtaaccacaggacgagcggcggggaaaagtag
DBGET
integrated database retrieval system
