Chryseobacterium nakagawai: EG343_19810
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Entry
EG343_19810 CDS
T06300
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cnk
Chryseobacterium nakagawai
Pathway
cnk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG343_19810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnk03019
]
EG343_19810
03009 Ribosome biogenesis [BR:
cnk03009
]
EG343_19810
Enzymes [BR:
cnk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG343_19810
Messenger RNA biogenesis [BR:
cnk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG343_19810
Ribosome biogenesis [BR:
cnk03009
]
Prokaryotic type
rRNA helicases
EG343_19810
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AZA92676
UniProt:
A0A3S4T9R2
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All DBs
Position
4343221..4344924
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AA seq
567 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMNIKTTAVYGGSSIVDQMRSLKD
KPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQTF
LFSATMNKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVVGYRQKKEALKRLIDANP
NQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATDV
AARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMALTKPEESRKLKQIKSAT
KIEINEKFIPTGEDIIKAQVGGVFEKLLTEHEDIFEFDDSLIPDLSNFTKEELVHQLLQF
QLKDLALYYKDKHDLAEQKLSSRDDDYSRRDRGRDRDRDRGRDRDGRDRDRGRDRDRGGK
PRRKDENMVRFFFNLGKKDHLKKLDVLDIINKATADGKSKKRAEIGDIEILEKFSFFEVE
KSFKDNVLSNIQSMKFKGKDMRAEVAN
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatatccttaaggcaattggcgaactg
ggttacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttctaaagacataaagaattactctaaatacatgaacatc
aaaactactgcggtttatggtggaagtagtattgtagaccagatgagatctttaaaggac
aaaccacaaattattgtgggaactccaggtagggtaattgaccttatcaacagaaaagca
ttagatttttctgccattcattggttagtattagacgaagctgatgaaatgctttcaatg
ggattcaaggatgaattggaaaccattctaagcgaaactccggaaactaaacaaactttc
ttattctcggctacgatgaataaagaagtggaaagaatttccaaaaattatcttacaaag
ccacaccgtatttcagtaggttctatcaacgaagtgaagaagaacattaaacatgaatat
tatgtggtaggataccgtcagaaaaaagaagcattaaaaagattaattgatgcaaacccg
aaccagtattccattattttctgtagaacaagaatggaaactcaggaggttgcagatttc
ttaatgcagaacgggtacgcagctgatgcccttcacggtgacctttctcaggcacagaga
gatacagtaatgaagaaattcagattgaaaaacatcgatattcttgtcgctacagacgtt
gcagcaagaggattggatgttaactctctgactcacgttattcacttctctttacctgat
gatcctgaagtatttgttcacagaagtggaagaacaggtagagcaggtaaagacggtatt
tctatggctttaaccaagccagaagaaagcagaaaactgaagcaaatcaaatctgctact
aaaattgaaattaacgaaaaatttattcctacaggagaagatattatcaaagctcaggta
ggaggtgttttcgaaaaattattaacggaacacgaagatattttcgaatttgatgatagc
ttaattccagatctaagtaactttacaaaagaagaattggtgcaccagttgctacaattc
caattgaaagatcttgctttatactacaaggataaacatgatcttgctgaacagaaattg
agcagcagagatgatgattactcaagaagagaccgtggacgtgatagagacagagataga
ggaagagacagagatggaagagacagagaccgcggtagagatagagatcgtggtggaaag
ccaagaagaaaagatgaaaacatggtaagattcttcttcaaccttggtaaaaaagaccat
ttgaagaaacttgatgttttagatattatcaacaaggctactgctgacggaaaaagtaag
aaaagagctgaaattggagatatcgagattcttgaaaaattctctttcttcgaagttgaa
aaatcattcaaagacaatgttttaagtaacattcaatcaatgaaatttaaaggtaaagat
atgagagctgaagtagctaactaa
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